Hi Everyone,

I am running into an error, pasted below, at the 3dDeconvolve step.

** ERROR: -gltsym: can't match symbolic name 'c1'
** ERROR: row #1 of matrix 'SYM: +c1' is all zero!
** ERROR: -gltsym errors immediately above from file 'SYM: +c1'
** ERROR: -gltsym: can't match symbolic name 'c2'
** ERROR: row #1 of matrix 'SYM: +c2' is all zero!
** ERROR: -gltsym errors immediately above from file 'SYM: +c2'
** ERROR: -gltsym: can't match symbolic name 'c3'
** ERROR: row #1 of matrix 'SYM: +c3' is all zero!
** ERROR: -gltsym errors immediately above from file 'SYM: +c3'
** ERROR: -gltsym: can't match symbolic name 'c4'
** ERROR: row #1 of matrix 'SYM: +c4' is all zero!
** ERROR: -gltsym errors immediately above from file 'SYM: +c4'
** ERROR: -gltsym: can't match symbolic name 'c5'
** ERROR: row #1 of matrix 'SYM: +c5' is all zero!
** ERROR: -gltsym errors immediately above from file 'SYM: +c5'
** ERROR: -gltsym: can't match symbolic name 'c1'
** ERROR: -gltsym: can't match symbolic name 'c5'
** ERROR: row #1 of matrix 'SYM: +c1 -c5' is all zero!
** ERROR: -gltsym errors immediately above from file 'SYM: +c1 -c5'
** FATAL ERROR: Can't continue after the above -gltsym problems!

The auto generated portion of the afni_proc.py for this step is

3dDeconvolve -input pb03.$subj.r*.scale+tlrc.HEAD \
-censor censor_${subj}_combined_2.1D \
-polort 6 \
-local_times \
-num_stimts 11 \
-stim_times 1 stimuli/11481001-1_Timing_01.1D 'GAM' \
-stim_label 1 ALL \
-stim_times 2 stimuli/11481001-1_Timing_02.1D 'GAM' \
-stim_label 2 BAM \
-stim_times 3 stimuli/11481001-1_Timing_03.1D 'GAM' \
-stim_label 3 CON \
-stim_times 4 stimuli/11481001-1_Timing_04.1D 'GAM' \
-stim_label 4 CR \
-stim_times 5 stimuli/11481001-1_Timing_05.1D 'GAM' \
-stim_label 5 FIX \
-stim_file 6 motion_demean.1D'[0]' -stim_base 6 -stim_label 6 roll \
-stim_file 7 motion_demean.1D'[1]' -stim_base 7 -stim_label 7 pitch \
-stim_file 8 motion_demean.1D'[2]' -stim_base 8 -stim_label 8 yaw \
-stim_file 9 motion_demean.1D'[3]' -stim_base 9 -stim_label 9 dS \
-stim_file 10 motion_demean.1D'[4]' -stim_base 10 -stim_label 10 dL \
-stim_file 11 motion_demean.1D'[5]' -stim_base 11 -stim_label 11 dP \
-num_glt 6 \
-gltsym 'SYM: +c1' \
-glt_label 1 ALL \
-gltsym 'SYM: +c2' \
-glt_label 2 BAM \
-gltsym 'SYM: +c3' \
-glt_label 3 CON \
-gltsym 'SYM: +c4' \
-glt_label 4 CR \
-gltsym 'SYM: +c5' \
-glt_label 5 FIX \
-gltsym 'SYM: +c1 -c5' \
-glt_label 6 ALL-FIX \
-fout -tout -x1D X.xmat.1D -xjpeg X.jpg \
-x1D_uncensored X.nocensor.xmat.1D \
-fitts fitts.$subj \
-errts errts.${subj} \
-bucket stats.$subj

The 1D files that I am using are a single row space delimited file, in seconds, and I suspect that that might not be the right format for the input times, but I could be wrong about this. I was hoping if someone would be able to point out and explain to me where I have goofed. I am fairly new to afni and would deeply appreciate any help on this.

Thanks,

B