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History of AFNI updates  

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April 25, 2017 11:32PM
Hello,
I've run into an error running 3dLME and would very much appreciate some tips on how to troubleshoot, here is my error in the ouput:

3dLME -prefix EESND_Amygdala_Seed_Output -jobs 10 -model age*cond*hem -ranEff ~1
Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :
argument is of length zero
Calls: process.LME.opts
Execution halted
-num_glt 44 -gltLabel 1 Hemisphere -gltCode 1 hem: 1*R -1*L -gltLabel 2 Baseline -gltCode 2 hem: 1*L 1*R -gltLabel 3 BaselineL -gltCode 3 hem: 1*L -gltLabel 4 BaselineR -gltCode 4 hem: 1*R -gltLabel 5 3mo-6mo -gltCode 5 age : 1*3mo -1*6mo -gltLabel 6 3mo-6mo_hem -gltCode 6 age : 1*3mo -1*6mo hem : 1*R -1*L -gltLabel 7 3mo-12mo -gltCode 7 age : 1*3mo -1*12mo -gltLabel 8 3mo-12mo_hem -gltCode 8 age : 1*3mo -1*12mo hem : 1*R -1*L -gltLabel 9 3mo-18mo -gltCode 9 age : 1*3mo -1*18mo -gltLabel 10 3mo-18mo_hem -gltCode 10 age : 1*3mo -1*18mo hem : 1*R -1*L -gltLabel 11 6mo-12mo -gltCode 11 age : 1*6mo -1*12mo -gltLabel 12 6mo-12mo_hem -gltCode 12 age : 1*6mo -1*12mo hem : 1*R -1*L -gltLabel 13 6mo-18mo -gltCode 13 age : 1*6mo -1*18mo -gltLabel 14 6mo-18mo_hem -gltCode 14 age : 1*6mo -1*18mo hem : 1*R -1*L -gltLabel 15 12mo-18mo -gltCode 15 age : 1*12mo -1*18mo -gltLabel 16 12mo-18mo_hem -gltCode 16 age : 1*12mo -1*18mo hem : 1*R -1*L -gltLabel 17 mal-ctr -gltCode 17 cond : 1*mal -1*ctr -gltLabel 18 mal-ctr_hem -gltCode 18 cond : 1*mal -1*ctr hem : 1*R -1*L -gltLabel 19 mal-ctr_Rhem -gltCode 19 cond : 1*mal -1*ctr hem : 1*R
-num_glt: Command not found.
-gltLabel 20 mal-ctr_Lhem -gltCode 20 cond : 1*mal -1*ctr hem : 1*L
-gltLabel: Command not found.
-gltLabel 21 mal_3mo-6mo -gltCode 21 age : 1*3mo -1*6mo cond:1*mal -gltLabel 22 mal_3mo-6mo_hem -gltCode 22 age : 1*3mo -1*6mo cond:1*mal hem : 1*R -1*L -gltLabel 23 mal_3mo-6mo_Rhem -gltCode 23 age : 1*3mo -1*6mo cond:1*mal hem : 1*R -gltLabel 24 mal_3mo-6mo_Lhem -gltCode 24 age : 1*3mo -1*6mo cond:1*mal hem : 1*L -gltLabel 25 mal_3mo-12mo -gltCode 25 age : 1*3mo -1*12mo cond:1*mal -gltLabel 26 mal_3mo-12mo_hem -gltCode 26 age : 1*3mo -1*12mo cond:1*mal hem : 1*R -1*L -gltLabel 27 mal_3mo-12mo_Rhem -gltCode 27 age : 1*3mo -1*12mo cond:1*mal hem : 1*R -gltLabel 28 mal_3mo-12mo_Lhem -gltCode 28 age : 1*3mo -1*12mo cond:1*mal hem : 1*L -gltLabel 29 mal_3mo-18mo -gltCode 29 age : 1*3mo -1*18mo cond:1*mal -gltLabel 30 mal_3mo-18mo_hem -gltCode 30 age : 1*3mo -1*18mo cond:1*mal hem : 1*R -1*L -gltLabel 31 mal_3mo-18mo_Rhem -gltCode 31 age : 1*3mo -1*18mo cond:1*mal hem : 1*R -gltLabel 32 mal_3mo-18mo_Lhem -gltCode 32 age : 1*3mo -1*18mo cond:1*mal hem : 1*L -gltLabel 33 mal_6mo-12mo -gltCode 33 age : 1*6mo -1*12mo cond:1*mal -gltLabel 34 mal_6mo-12mo_hem -gltCode 34 age : 1*6mo -1*12mo cond:1*mal hem : 1*R -1*L -gltLabel 35 mal_6mo-12mo_Rhem -gltCode 35 age : 1*6mo -1*12mo cond:1*mal hem : 1*R -gltLabel 36 mal_6mo-12mo_Lhem -gltCode 36 age : 1*6mo -1*12mo cond:1*mal hem : 1*L -gltLabel 37 mal_6mo-18mo -gltCode 37 age : 1*6mo -1*18mo cond:1*mal -gltLabel 38 mal_6mo-18mo_hem -gltCode 38 age : 1*6mo -1*18mo cond:1*mal hem : 1*R -1*L -gltLabel 39 mal_6mo-18mo_Rhem -gltCode 39 age : 1*6mo -1*18mo cond:1*mal hem : 1*R -gltLabel 40 mal_6mo-18mo_Lhem -gltCode 40 age : 1*6mo -1*18mo cond:1*mal hem : 1*L -gltLabel 41 mal_12mo-18mo -gltCode 41 age : 1*12mo -1*18mo cond:1*mal -gltLabel 42 mal_12mo-18mo_hem -gltCode 42 age : 1*12mo -1*18mo cond:1*mal hem : 1*R -1*L -gltLabel 43 mal_12mo-18mo_Rhem -gltCode 43 age : 1*12mo -1*18mo cond:1*mal hem : 1*R -gltLabel 44 mal_12mo-18mo_Lhem -gltCode 44 age : 1*12mo -1*18mo cond:1*mal hem : 1*L -dataTable Subj age cond hem InputFile RNN14 6mo mal L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY6MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-6mo-GSR+20111011-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_6mo_Smoothed/Styner_to_F99_ROI_L.nii.gz RNN14 6mo mal R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY6MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-6mo-GSR+20111011-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_6mo_Smoothed/Styner_to_F99_ROI_R.nii.gz RNN14 12mo mal L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-12mo-GSR+20120425-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_L.nii.gz RNN14 12mo mal R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-12mo-GSR+20120425-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_R.nii.gz RNN14 18mo mal L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-18mo-GSR+20121010-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_L.nii.gz RNN14 18mo mal R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-18mo-GSR+20121010-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/
...continues...



My 3dLME script is as follows:

3dLME -prefix EESND_Amygdala_Seed_Output -jobs 10 \
-model 'age*cond*hem' \
-ranEff '~1' \
-num_glt 44 \
-gltLabel 1 Hemisphere -gltCode 1 'hem: 1*R -1*L' \
-gltLabel 2 Baseline -gltCode 2 'hem: 1*L 1*R' \
-gltLabel 3 BaselineL -gltCode 3 'hem: 1*L' \
-gltLabel 4 BaselineR -gltCode 4 'hem: 1*R' \
-gltLabel 5 3mo-6mo -gltCode 5 'age : 1*3mo -1*6mo' \
-gltLabel 6 3mo-6mo_hem -gltCode 6 'age : 1*3mo -1*6mo hem : 1*R -1*L' \
-gltLabel 7 3mo-12mo -gltCode 7 'age : 1*3mo -1*12mo' \
-gltLabel 8 3mo-12mo_hem -gltCode 8 'age : 1*3mo -1*12mo hem : 1*R -1*L' \
-gltLabel 9 3mo-18mo -gltCode 9 'age : 1*3mo -1*18mo' \
-gltLabel 10 3mo-18mo_hem -gltCode 10 'age : 1*3mo -1*18mo hem : 1*R -1*L' \
-gltLabel 11 6mo-12mo -gltCode 11 'age : 1*6mo -1*12mo' \
-gltLabel 12 6mo-12mo_hem -gltCode 12 'age : 1*6mo -1*12mo hem : 1*R -1*L' \
-gltLabel 13 6mo-18mo -gltCode 13 'age : 1*6mo -1*18mo' \
-gltLabel 14 6mo-18mo_hem -gltCode 14 'age : 1*6mo -1*18mo hem : 1*R -1*L' \
-gltLabel 15 12mo-18mo -gltCode 15 'age : 1*12mo -1*18mo' \
-gltLabel 16 12mo-18mo_hem -gltCode 16 'age : 1*12mo -1*18mo hem : 1*R -1*L' \
-gltLabel 17 mal-ctr -gltCode 17 'cond : 1*mal -1*ctr' \
-gltLabel 18 mal-ctr_hem -gltCode 18 'cond : 1*mal -1*ctr hem : 1*R -1*L' \
-gltLabel 19 mal-ctr_Rhem -gltCode 19 'cond : 1*mal -1*ctr hem : 1*R' \
-gltLabel 20 mal-ctr_Lhem -gltCode 20 'cond : 1*mal -1*ctr hem : 1*L' \
-gltLabel 21 mal_3mo-6mo -gltCode 21 'age : 1*3mo -1*6mo cond:1*mal' \
-gltLabel 22 mal_3mo-6mo_hem -gltCode 22 'age : 1*3mo -1*6mo cond:1*mal hem : 1*R -1*L' \
-gltLabel 23 mal_3mo-6mo_Rhem -gltCode 23 'age : 1*3mo -1*6mo cond:1*mal hem : 1*R' \
-gltLabel 24 mal_3mo-6mo_Lhem -gltCode 24 'age : 1*3mo -1*6mo cond:1*mal hem : 1*L' \
-gltLabel 25 mal_3mo-12mo -gltCode 25 'age : 1*3mo -1*12mo cond:1*mal' \
-gltLabel 26 mal_3mo-12mo_hem -gltCode 26 'age : 1*3mo -1*12mo cond:1*mal hem : 1*R -1*L' \
-gltLabel 27 mal_3mo-12mo_Rhem -gltCode 27 'age : 1*3mo -1*12mo cond:1*mal hem : 1*R' \
-gltLabel 28 mal_3mo-12mo_Lhem -gltCode 28 'age : 1*3mo -1*12mo cond:1*mal hem : 1*L' \
-gltLabel 29 mal_3mo-18mo -gltCode 29 'age : 1*3mo -1*18mo cond:1*mal' \
-gltLabel 30 mal_3mo-18mo_hem -gltCode 30 'age : 1*3mo -1*18mo cond:1*mal hem : 1*R -1*L' \
-gltLabel 31 mal_3mo-18mo_Rhem -gltCode 31 'age : 1*3mo -1*18mo cond:1*mal hem : 1*R' \
-gltLabel 32 mal_3mo-18mo_Lhem -gltCode 32 'age : 1*3mo -1*18mo cond:1*mal hem : 1*L' \
-gltLabel 33 mal_6mo-12mo -gltCode 33 'age : 1*6mo -1*12mo cond:1*mal' \
-gltLabel 34 mal_6mo-12mo_hem -gltCode 34 'age : 1*6mo -1*12mo cond:1*mal hem : 1*R -1*L' \
-gltLabel 35 mal_6mo-12mo_Rhem -gltCode 35 'age : 1*6mo -1*12mo cond:1*mal hem : 1*R' \
-gltLabel 36 mal_6mo-12mo_Lhem -gltCode 36 'age : 1*6mo -1*12mo cond:1*mal hem : 1*L' \
-gltLabel 37 mal_6mo-18mo -gltCode 37 'age : 1*6mo -1*18mo cond:1*mal' \
-gltLabel 38 mal_6mo-18mo_hem -gltCode 38 'age : 1*6mo -1*18mo cond:1*mal hem : 1*R -1*L' \
-gltLabel 39 mal_6mo-18mo_Rhem -gltCode 39 'age : 1*6mo -1*18mo cond:1*mal hem : 1*R' \
-gltLabel 40 mal_6mo-18mo_Lhem -gltCode 40 'age : 1*6mo -1*18mo cond:1*mal hem : 1*L' \
-gltLabel 41 mal_12mo-18mo -gltCode 41 'age : 1*12mo -1*18mo cond:1*mal' \
-gltLabel 42 mal_12mo-18mo_hem -gltCode 42 'age : 1*12mo -1*18mo cond:1*mal hem : 1*R -1*L' \
-gltLabel 43 mal_12mo-18mo_Rhem -gltCode 43 'age : 1*12mo -1*18mo cond:1*mal hem : 1*R' \
-gltLabel 44 mal_12mo-18mo_Lhem -gltCode 44 'age : 1*12mo -1*18mo cond:1*mal hem : 1*L' \
-dataTable Subj age cond hem InputFile \
RNN14 6mo mal L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY6MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-6mo-GSR+20111011-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_6mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RNN14 6mo mal R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY6MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-6mo-GSR+20111011-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_6mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
RNN14 12mo mal L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-12mo-GSR+20120425-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RNN14 12mo mal R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-12mo-GSR+20120425-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
RNN14 18mo mal L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-18mo-GSR+20121010-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RNN14 18mo mal R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RNN14-18mo-GSR+20121010-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
RFO14 3mo ctr L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY3MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-3mo-GSR+20110728-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_3mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RFO14 3mo ctr R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY3MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-3mo-GSR+20110728-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_3mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
RFO14 6mo ctr L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY6MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-6mo-GSR+20111018-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_6mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RFO14 6mo ctr R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY6MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-6mo-GSR+20111018-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_6mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
RFO14 12mo ctr L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-12mo-GSR+20120502-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RFO14 12mo ctr R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-12mo-GSR+20120502-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
RFO14 18mo ctr L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-18mo-GSR+20121017-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RFO14 18mo ctr R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY12MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RFO14-18mo-GSR+20121017-SIEMENS_TrioTim-xiaodong_xiaodong_New/FCmaps/Amygdala_EESND_1218mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
RKR14 3mo mal L /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY3MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RKR14-3mo-GSR+20110816-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_3mo_Smoothed/Styner_to_F99_ROI_L.nii.gz \
RKR14 3mo mal R /projects/sanchez_share/analyses_v2/EESND/FAIRPRE_FSL_13_MONKEY3MOT1_E_DFM_NLIN-FCON13-SEEDCORREL_1_FD0pt2/RKR14-3mo-GSR+20110816-SIEMENS_TrioTim-xiaodong_Anatomical/FCmaps/Amygdala_EESND_3mo_Smoothed/Styner_to_F99_ROI_R.nii.gz \
....more subjects follow...
Subject Author Posted

3dLME - content not rectangular error

e_louise April 25, 2017 11:32PM

Re: 3dLME - content not rectangular error

rick reynolds April 26, 2017 08:27AM

Re: 3dLME - content not rectangular error

e_louise April 26, 2017 09:52AM

Re: 3dLME - content not rectangular error

rick reynolds April 26, 2017 10:02AM

Re: 3dLME - content not rectangular error

e_louise April 26, 2017 10:59AM

Re: 3dLME - content not rectangular error

rick reynolds April 26, 2017 11:06AM

Re: 3dLME - content not rectangular error

e_louise April 26, 2017 11:24AM

Re: 3dLME - content not rectangular error

rick reynolds April 26, 2017 01:43PM

Re: 3dLME - content not rectangular error

a.scalabrini May 16, 2017 10:56AM