AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
May 16, 2017 03:15PM
Hi,

I'm trying to run 3dMVM to see if there is significant difference between groups (G1, 2, 3, 4) in terms of neural activation during anticipation of monetary gain. I choose 3dMVM instead of 3dANOVA because we have unbalanced sample. I was wondering what is the accurate way to set up glfCode and gltCode to run F-test to test for the overall group difference, as well as post-hoc ttests to test the difference between the groups.

Below is what I had in the script:

-num_glf 1 \
-glfLabel 1 group -glfCode 1 'group : 1*G1 & 1*G2 & 1*G3 &1*G4' \
-num_glt 6 \
-gltLabel 1 G2-G1 -gltCode 1 'group : 1*G2 - 1*G1' \
-gltLabel 2 G3-G1 -gltCode 2 'group : 1*G3 - 1*G1' \
-gltLabel 3 G4-G1 -gltCode 3 'group : 1*G4 - 1*G1' \
-gltLabel 4 G3-G2 -gltCode 4 'group : 1*G3 - 1*G2' \
-gltLabel 5 G4-G2 -gltCode 5 'group : 1*G4 - 1*G2' \
-gltLabel 6 G4-G3 -gltCode 6 'group : 1*G4 - 1*G3' \

I have tried running the script, but received an error message saying: "Inappropriate coding in test No.1!"

Best,
Tien
Subject Author Posted

3dMVM: help with glfCode and gltCode

Tien Tong May 16, 2017 03:15PM

Re: 3dMVM: help with glfCode and gltCode

gang May 16, 2017 03:58PM

Re: 3dMVM: help with glfCode and gltCode

Tien Tong May 19, 2017 11:56AM

Re: 3dMVM: help with glfCode and gltCode

gang May 19, 2017 07:07PM