AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
dawoon
July 17, 2017 10:06PM
Dear AFNI experts,

I have an question regarding the alignment.. (actually, I'm not fully sure that it is related to the alignment..)
Not all the subjects, but only one subject shows different brain shape after pre-processing.
(You could find the image in the attachment [(A): different one, (B) normal one].)

When I tried to check the step, it seems that it has an issue in 'align' part.
The problem is, even I tried to change the values or options,
(e.g. add option: -deoblique / change values in the options: -volreg off → -volreg on, 3dAutomask → 3dSkullStrip, and so on),
I could not get the correct one (I also tried to generate and input anatomical and epi data again).

Therefore, may I ask you how can I get the correct/general pre-processing result?
Thank you in advance.

Regards,
dawoon
Reply Quote
Attachments:
open | download - figure.jpg (82 KB)
RSS
Subject Author Posted

Regarding the alignment (different brain shape after the pre-processing) Attachments

dawoon July 17, 2017 10:06PM

Re: Regarding the alignment (different brain shape after the pre-processing)

rick reynolds July 27, 2017 08:49AM

Re: Regarding the alignment (different brain shape after the pre-processing)

dawoon July 31, 2017 12:32AM