AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 03, 2017 05:00PM
Hello,

I'd like to examine change over time (weeks) in activation by a particular two-run task, within an individual subject (i.e. get a map of that person's contrast-elicited activation at T2 minus contrast-elicited activation at Time1).

What I'd like to do is essentially what was recommended in this ancient post:

[afni.nimh.nih.gov]

However, I'm wondering what the syntax would be. I want to AVOID having to actually spatially align and concatenate my two time series into one long one, and change all the elapsed times of the task stimuli/events of the T2 scan by adding the total duration (s) of the first scan's time series etc.

Is there a way to specify that 3dDeconvolve invoke one time-series EPIRT dataset as session 2, and a different time-series EPIRT dataset as session 1 and contrast them somehow, to yield a bucket dataset? What would the model specifier be to denote within-subject analysis?

I see no exemplar for this in the -help or in the 3dDeconvolve pdf manual.

Thanks

Jim
Subject Author Posted

3dDeconvolve to calculate within-individual-subject change in contrast activation between T1 and T2

jmbjork October 03, 2017 05:00PM

Re: 3dDeconvolve to calculate within-individual-subject change in contrast activation between T1 and T2

gang October 05, 2017 11:38AM

Re: 3dDeconvolve to calculate within-individual-subject change in contrast activation between T1 and T2

jmbjork October 06, 2017 08:48AM

Re: 3dDeconvolve to calculate within-individual-subject change in contrast activation between T1 and T2

gang October 06, 2017 02:20PM