AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Fairy
December 09, 2017 12:09AM
Dear all,

How should I know the slice acquisition order(such as sequence,alternative.....) just with NIFIT format?(the scanner information:mobile 1.5T Siemens Avanto)

I have already tried some ways but there are no effects to obtain the information of the slice time :

1. 3dinfo -VERB filename.nii.gz | grep offsets

the results :

++ 3dinfo: AFNI version=AFNI_17.3.05 (Nov 27 2017) [64-bit][/color]

2. 3dinfo -slice_timing filename.nii.gz

the results :
0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000|0.000000


I am confused about the slice time order,and I have the file just the NIFIT format not DICOM format ,so if any comman just like Dimon and anything others will work out???


Thanks a lot!
Fairy



Edited 1 time(s). Last edit at 12/10/2017 04:10AM by Fairy.
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Subject Author Posted

How should I know the slice acquisition order just with NIFIT format?

Fairy December 09, 2017 12:09AM

Re: How should I know the slice acquisition order just with NIFIT format?

Fairy December 10, 2017 04:34AM

Re: How should I know the slice acquisition order just with NIFIT format?

rick reynolds December 10, 2017 03:46PM