AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Ddickstein
July 25, 2018 08:13AM
What does this warning mean--as part of afni_proc.py script: "WARNING: Input dataset is not 3D+time; assuming TR=1.0"

Pasting bigger chunk of output: ++ 3dTstat: AFNI version=AFNI_17.2.02 (Jul 10 2017) [64-bit]
++ Authored by: KR Hammett & RW Cox
*+ WARNING: Input dataset is not 3D+time; assuming TR=1.0
echo average errts FWHM blurs: 8.82189 8.99374 8.18736 8.66061
average errts FWHM blurs: 8.82189 8.99374 8.18736 8.66061
echo 8.82189 8.99374 8.18736 8.66061 # errts FWHM blur estimates
set blurs = ( `3dTstat -mean -prefix - blur.errts.1D'{1..$(2)}'\'` )
3dTstat -mean -prefix - blur.errts.1D{1..$(2)}'
++ 3dTstat: AFNI version=AFNI_17.2.02 (Jul 10 2017) [64-bit]
++ Authored by: KR Hammett & RW Cox
*+ WARNING: Input dataset is not 3D+time; assuming TR=1.0
echo average errts ACF blurs: 0.413134 5.09167 12.8729 14.0256
average errts ACF blurs: 0.413134 5.09167 12.8729 14.0256
echo 0.413134 5.09167 12.8729 14.0256 # errts ACF blur estimates
mkdir files_ClustSim
set params = ( `grep ACF blur_est.$subj.1D | tail -n 1` )
grep ACF blur_est.s8076.chat.1D
tail -n 1

Thanks!

-Dan
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Subject Author Posted

afni proc warning "Input dataset is not 3D+time; assuming TR=1.0

Ddickstein July 25, 2018 08:13AM

Re: afni proc warning "Input dataset is not 3D+time; assuming TR=1.0

rick reynolds July 25, 2018 10:16AM

Re: afni proc warning "Input dataset is not 3D+time; assuming TR=1.0

Ddickstein July 25, 2018 10:45AM

Re: afni proc warning "Input dataset is not 3D+time; assuming TR=1.0

rick reynolds July 25, 2018 11:01AM