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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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vferrer
October 25, 2018 10:23AM
Hi, I am having problems with 3dskullstrip in ubuntu 18
the command gives this error:
3dSkullStrip: error while loading shared libraries: libgsl.so.19: cannot open shared object file: No such file or directory
it seems that libgsl.so.19 is deprecated because i have installed GNU scientific libraries, you can check that every other library is there:

ldd `which 3dSkullStrip`
linux-vdso.so.1 (0x00007fff004ff000)
libXm.so.4 => /usr/lib/x86_64-linux-gnu/libXm.so.4 (0x00007f08397b5000)
libGLw.so.1 => /usr/lib/x86_64-linux-gnu/libGLw.so.1 (0x00007f08395ae000)
libGLU.so.1 => /usr/lib/x86_64-linux-gnu/libGLU.so.1 (0x00007f083933f000)
libGL.so.1 => /usr/lib/x86_64-linux-gnu/libGL.so.1 (0x00007f08390b3000)
libXmu.so.6 => /usr/lib/x86_64-linux-gnu/libXmu.so.6 (0x00007f0838e9a000)
libXt.so.6 => /usr/lib/x86_64-linux-gnu/libXt.so.6 (0x00007f0838c31000)
libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6 (0x00007f0838a1f000)
libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6 (0x00007f08386e7000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f08384ca000)
libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f0838298000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f0837efa000)
libgsl.so.19 => not found
libgslcblas.so.0 => /usr/lib/x86_64-linux-gnu/libgslcblas.so.0 (0x00007f0837cbb000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f08378ca000)
libfontconfig.so.1 => /usr/lib/x86_64-linux-gnu/libfontconfig.so.1 (0x00007f0837685000)
libXft.so.2 => /usr/lib/x86_64-linux-gnu/libXft.so.2 (0x00007f0837470000)
libjpeg.so.8 => /usr/lib/x86_64-linux-gnu/libjpeg.so.8 (0x00007f0837208000)
libpng16.so.16 => /usr/lib/x86_64-linux-gnu/libpng16.so.16 (0x00007f0836fd6000)
libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f0836c4d000)
libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f0836a35000)
libGLX.so.0 => /usr/lib/x86_64-linux-gnu/libGLX.so.0 (0x00007f0836804000)
libGLdispatch.so.0 => /usr/lib/x86_64-linux-gnu/libGLdispatch.so.0 (0x00007f083654e000)
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f083632f000)
libSM.so.6 => /usr/lib/x86_64-linux-gnu/libSM.so.6 (0x00007f0836127000)
libICE.so.6 => /usr/lib/x86_64-linux-gnu/libICE.so.6 (0x00007f0835f0c000)
libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1 (0x00007f0835ce4000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f0835ae0000)
/lib64/ld-linux-x86-64.so.2 (0x00007f0839c77000)
libfreetype.so.6 => /usr/lib/x86_64-linux-gnu/libfreetype.so.6 (0x00007f083582c000)
libXrender.so.1 => /usr/lib/x86_64-linux-gnu/libXrender.so.1 (0x00007f0835622000)
libuuid.so.1 => /lib/x86_64-linux-gnu/libuuid.so.1 (0x00007f083541b000)
libbsd.so.0 => /lib/x86_64-linux-gnu/libbsd.so.0 (0x00007f0835206000)
libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6 (0x00007f0835002000)
libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6 (0x00007f0834dfc000)
librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f0834bf4000)
Do you know how to solve this problem?
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Subject Author Posted

3dSkullStrip

vferrer October 25, 2018 10:23AM

Re: 3dSkullStrip

Daniel Glen October 25, 2018 01:39PM