AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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charujing123
November 13, 2018 12:20AM
I have used this script below. Does this mean that the datasets were non-linearly transformed to MNI space?

afni_proc.py -subj_id $sb \
-blocks despike tshift align tlrc volreg blur mask regress \
-copy_anat ${sb}_SurfVol.nii \
-anat_follower_ROI aaseg anat aparc.a2009s+aseg.nii \
-anat_follower_ROI aeseg epi aparc.a2009s+aseg.nii \
-anat_follower_ROI FSvent epi aparc.a2009s+aseg_REN_vent.nii.gz \
-anat_follower_ROI FSWe epi aparc.a2009s+aseg_REN_wmat.nii.gz \
-anat_follower_erode FSvent FSWe \
-dsets ${path_dest}/function/$sb/rest+orig.HEAD \
-tcat_remove_first_trs 2 \
-align_opts_aea -cost lpc+ZZ \
-tlrc_base MNI152_2009_template.nii.gz \
-tlrc_NL_warp \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-blur_size 8 \
-volreg_tlrc_warp \
-regress_motion_per_run \
-regress_ROI_PC FSvent 3 \
-regress_make_corr_vols aeseg FSvent \
-regress_anaticor_fast \
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Subject Author Posted

-tlrc_base in afni_proc.py

charujing123 November 13, 2018 12:20AM

Re: -tlrc_base in afni_proc.py

charujing123 November 16, 2018 02:52AM

Re: -tlrc_base in afni_proc.py

rick reynolds November 16, 2018 09:06AM

Re: -tlrc_base in afni_proc.py

charujing123 November 19, 2018 08:05PM