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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| November 29, 2018 12:42AM | |
Registered: 5 years ago Posts: 8 |
Hi Daniel,
After orienting the epi data, I reran my preprocessing through afni_proc.py. I want to do pre-whitening through 3dREMLfit, but I'm getting the following error:
3dREMLfit -matrix X.xmat.1D -input pb04.sub_id.r01.scale+tlrc.HEAD -fout -tout -Rbuck stats.sub_id_REML -Rvar stats.sub_id_REMLvar -Rfitts fitts.sub_id_REML -Rerrts errts.sub_id_REML -verb
++ 3dREMLfit: AFNI version=AFNI_18.2.04 (Jul 6 2018) [64-bit]
++ Authored by: RWCox
++ Number of OpenMP threads = 23
++ No mask ==> computing for all 1050624 voxels
++ FDR automask has 648696 voxels (out of 1050624 = 61.7%)
++ ----- matrix condition (1359x721): 3157.43 ++ OK ++
*+ WARNING: !! in matrix:
* Largest singular value=2.28069
* 2 singular values are less than cutoff=2.28069e-07
* Implies strong collinearity in the matrix columns!
++ matrix singular values:
1.87612e-07 1.99549e-07 2.2877e-07 2.64371e-07 2.25929e-05
0.000198812 0.00750844 0.0332996 0.0401774 0.0923025
0.151598 0.207106 0.324679 0.440766 0.674007
0.809561 0.999858 0.999925 0.999933 0.999934
0.999937 0.99994 0.99994 0.99994 0.999941
0.999942 0.999942 0.999943 0.999943 0.999945
0.999945 0.999946 0.999946 0.999947 0.999947
0.999948 0.999949 0.999949 0.999949 0.999949
0.99995 0.99995 0.999951 0.999951 0.999952
0.999952 0.999952 0.999953 0.999953 0.999953
0.999954 0.999954 0.999954 0.999955 0.999955
0.999955 0.999956 0.999956 0.999956 0.999956
0.999956 0.999957 0.999957 0.999957 0.999958
0.999958 0.999958 0.999958 0.999959 0.999959
0.999959 0.99996 0.99996 0.99996 0.99996
0.99996 0.999961 0.999961 0.999961 0.999962
0.999962 0.999962 0.999962 0.999962 0.999962
0.999963 0.999963 0.999963 0.999963 0.999964
0.999964 0.999964 0.999964 0.999964 0.999965
0.999965 0.999965 0.999965 0.999965 0.999966
0.999966 0.999966 0.999966 0.999966 0.999967
0.999967 0.999967 0.999967 0.999967 0.999968
0.999968 0.999968 0.999968 0.999968 0.999969
0.999969 0.999969 0.999969 0.999969 0.99997
0.99997 0.99997 0.99997 0.99997 0.999971
0.999971 0.999971 0.999971 0.999971 0.999972
0.999972 0.999972 0.999972 0.999972 0.999972
0.999973 0.999973 0.999973 0.999973 0.999973
0.999973 0.999974 0.999974 0.999974 0.999974
0.999974 0.999974 0.999975 0.999975 0.999975
0.999975 0.999975 0.999975 0.999976 0.999976
0.999976 0.999976 0.999976 0.999976 0.999977
0.999977 0.999977 0.999977 0.999977 0.999977
0.999978 0.999978 0.999978 0.999978 0.999978
0.999978 0.999979 0.999979 0.999979 0.999979
0.999979 0.999979 0.999979 0.999979 0.99998
0.99998 0.99998 0.99998 0.99998 0.99998
0.99998 0.99998 0.999981 0.999981 0.999981
0.999981 0.999981 0.999981 0.999981 0.999982
0.999982 0.999982 0.999982 0.999982 0.999982
0.999982 0.999983 0.999983 0.999983 0.999983
0.999983 0.999983 0.999983 0.999983 0.999984
0.999984 0.999984 0.999984 0.999984 0.999984
0.999984 0.999984 0.999985 0.999985 0.999985
0.999985 0.999985 0.999985 0.999985 0.999985
0.999986 0.999986 0.999986 0.999986 0.999986
0.999986 0.999986 0.999986 0.999987 0.999987
0.999987 0.999987 0.999987 0.999987 0.999987
0.999987 0.999987 0.999987 0.999988 0.999988
0.999988 0.999988 0.999988 0.999988 0.999988
0.999988 0.999988 0.999989 0.999989 0.999989
0.999989 0.999989 0.999989 0.999989 0.999989
0.999989 0.99999 0.99999 0.99999 0.99999
0.99999 0.99999 0.99999 0.99999 0.99999
0.99999 0.999991 0.999991 0.999991 0.999991
0.999991 0.999991 0.999991 0.999991 0.999991
0.999991 0.999992 0.999992 0.999992 0.999992
0.999992 0.999992 0.999992 0.999992 0.999992
0.999992 0.999993 0.999993 0.999993 0.999993
0.999993 0.999993 0.999993 0.999993 0.999993
0.999993 0.999993 0.999994 0.999994 0.999994
0.999994 0.999994 0.999994 0.999994 0.999994
0.999994 0.999994 0.999994 0.999995 0.999995
0.999995 0.999995 0.999995 0.999995 0.999995
0.999995 0.999995 0.999995 0.999996 0.999996
0.999996 0.999996 0.999996 0.999996 0.999996
0.999996 0.999996 0.999996 0.999996 0.999996
0.999997 0.999997 0.999997 0.999997 0.999997
0.999997 0.999997 0.999997 0.999997 0.999997
0.999997 0.999998 0.999998 0.999998 0.999998
0.999998 0.999998 0.999998 0.999998 0.999998
0.999998 0.999998 0.999998 0.999999 0.999999
0.999999 0.999999 0.999999 0.999999 0.999999
0.999999 0.999999 0.999999 0.999999 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00006 1.00006 1.00006 1.00006
1.00006 1.00006 1.00006 1.00006 1.00006
1.00006 1.00006 1.00006 1.00006 1.00006
1.00006 1.00006 1.00006 1.00006 1.00006
1.00007 1.00007 1.00007 1.00007 1.00007
1.00007 1.00008 1.0001 1.0001 1.00015
1.0002 1.00396 1.00587 1.0229 1.07135
1.17158 1.27479 1.38634 1.4097 1.41083
1.41432 1.41615 1.43039 1.51861 1.68593
2.28069
** FATAL ERROR: Can't continue after matrix condition errors!
** you might try -GOFORIT, but be careful! (cf. '-help')
** Program compile date = Jul 6 2018
What would be the cause of this error? And, how do I fix this error?
Thanks,
Daniel Zhu
Edited 1 time(s). Last edit at 11/29/2018 02:29AM by Daniel Zhu.
After orienting the epi data, I reran my preprocessing through afni_proc.py. I want to do pre-whitening through 3dREMLfit, but I'm getting the following error:
3dREMLfit -matrix X.xmat.1D -input pb04.sub_id.r01.scale+tlrc.HEAD -fout -tout -Rbuck stats.sub_id_REML -Rvar stats.sub_id_REMLvar -Rfitts fitts.sub_id_REML -Rerrts errts.sub_id_REML -verb
++ 3dREMLfit: AFNI version=AFNI_18.2.04 (Jul 6 2018) [64-bit]
++ Authored by: RWCox
++ Number of OpenMP threads = 23
++ No mask ==> computing for all 1050624 voxels
++ FDR automask has 648696 voxels (out of 1050624 = 61.7%)
++ ----- matrix condition (1359x721): 3157.43 ++ OK ++
*+ WARNING: !! in matrix:
* Largest singular value=2.28069
* 2 singular values are less than cutoff=2.28069e-07
* Implies strong collinearity in the matrix columns!
++ matrix singular values:
1.87612e-07 1.99549e-07 2.2877e-07 2.64371e-07 2.25929e-05
0.000198812 0.00750844 0.0332996 0.0401774 0.0923025
0.151598 0.207106 0.324679 0.440766 0.674007
0.809561 0.999858 0.999925 0.999933 0.999934
0.999937 0.99994 0.99994 0.99994 0.999941
0.999942 0.999942 0.999943 0.999943 0.999945
0.999945 0.999946 0.999946 0.999947 0.999947
0.999948 0.999949 0.999949 0.999949 0.999949
0.99995 0.99995 0.999951 0.999951 0.999952
0.999952 0.999952 0.999953 0.999953 0.999953
0.999954 0.999954 0.999954 0.999955 0.999955
0.999955 0.999956 0.999956 0.999956 0.999956
0.999956 0.999957 0.999957 0.999957 0.999958
0.999958 0.999958 0.999958 0.999959 0.999959
0.999959 0.99996 0.99996 0.99996 0.99996
0.99996 0.999961 0.999961 0.999961 0.999962
0.999962 0.999962 0.999962 0.999962 0.999962
0.999963 0.999963 0.999963 0.999963 0.999964
0.999964 0.999964 0.999964 0.999964 0.999965
0.999965 0.999965 0.999965 0.999965 0.999966
0.999966 0.999966 0.999966 0.999966 0.999967
0.999967 0.999967 0.999967 0.999967 0.999968
0.999968 0.999968 0.999968 0.999968 0.999969
0.999969 0.999969 0.999969 0.999969 0.99997
0.99997 0.99997 0.99997 0.99997 0.999971
0.999971 0.999971 0.999971 0.999971 0.999972
0.999972 0.999972 0.999972 0.999972 0.999972
0.999973 0.999973 0.999973 0.999973 0.999973
0.999973 0.999974 0.999974 0.999974 0.999974
0.999974 0.999974 0.999975 0.999975 0.999975
0.999975 0.999975 0.999975 0.999976 0.999976
0.999976 0.999976 0.999976 0.999976 0.999977
0.999977 0.999977 0.999977 0.999977 0.999977
0.999978 0.999978 0.999978 0.999978 0.999978
0.999978 0.999979 0.999979 0.999979 0.999979
0.999979 0.999979 0.999979 0.999979 0.99998
0.99998 0.99998 0.99998 0.99998 0.99998
0.99998 0.99998 0.999981 0.999981 0.999981
0.999981 0.999981 0.999981 0.999981 0.999982
0.999982 0.999982 0.999982 0.999982 0.999982
0.999982 0.999983 0.999983 0.999983 0.999983
0.999983 0.999983 0.999983 0.999983 0.999984
0.999984 0.999984 0.999984 0.999984 0.999984
0.999984 0.999984 0.999985 0.999985 0.999985
0.999985 0.999985 0.999985 0.999985 0.999985
0.999986 0.999986 0.999986 0.999986 0.999986
0.999986 0.999986 0.999986 0.999987 0.999987
0.999987 0.999987 0.999987 0.999987 0.999987
0.999987 0.999987 0.999987 0.999988 0.999988
0.999988 0.999988 0.999988 0.999988 0.999988
0.999988 0.999988 0.999989 0.999989 0.999989
0.999989 0.999989 0.999989 0.999989 0.999989
0.999989 0.99999 0.99999 0.99999 0.99999
0.99999 0.99999 0.99999 0.99999 0.99999
0.99999 0.999991 0.999991 0.999991 0.999991
0.999991 0.999991 0.999991 0.999991 0.999991
0.999991 0.999992 0.999992 0.999992 0.999992
0.999992 0.999992 0.999992 0.999992 0.999992
0.999992 0.999993 0.999993 0.999993 0.999993
0.999993 0.999993 0.999993 0.999993 0.999993
0.999993 0.999993 0.999994 0.999994 0.999994
0.999994 0.999994 0.999994 0.999994 0.999994
0.999994 0.999994 0.999994 0.999995 0.999995
0.999995 0.999995 0.999995 0.999995 0.999995
0.999995 0.999995 0.999995 0.999996 0.999996
0.999996 0.999996 0.999996 0.999996 0.999996
0.999996 0.999996 0.999996 0.999996 0.999996
0.999997 0.999997 0.999997 0.999997 0.999997
0.999997 0.999997 0.999997 0.999997 0.999997
0.999997 0.999998 0.999998 0.999998 0.999998
0.999998 0.999998 0.999998 0.999998 0.999998
0.999998 0.999998 0.999998 0.999999 0.999999
0.999999 0.999999 0.999999 0.999999 0.999999
0.999999 0.999999 0.999999 0.999999 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1 1
1 1 1 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00001
1.00001 1.00001 1.00001 1.00001 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00002 1.00002 1.00002 1.00002
1.00002 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00003 1.00003 1.00003
1.00003 1.00003 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00004 1.00004 1.00004 1.00004
1.00004 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00005 1.00005 1.00005 1.00005
1.00005 1.00006 1.00006 1.00006 1.00006
1.00006 1.00006 1.00006 1.00006 1.00006
1.00006 1.00006 1.00006 1.00006 1.00006
1.00006 1.00006 1.00006 1.00006 1.00006
1.00007 1.00007 1.00007 1.00007 1.00007
1.00007 1.00008 1.0001 1.0001 1.00015
1.0002 1.00396 1.00587 1.0229 1.07135
1.17158 1.27479 1.38634 1.4097 1.41083
1.41432 1.41615 1.43039 1.51861 1.68593
2.28069
** FATAL ERROR: Can't continue after matrix condition errors!
** you might try -GOFORIT, but be careful! (cf. '-help')
** Program compile date = Jul 6 2018
What would be the cause of this error? And, how do I fix this error?
Thanks,
Daniel Zhu
Edited 1 time(s). Last edit at 11/29/2018 02:29AM by Daniel Zhu.
| Subject | Author | Posted |
|---|---|---|
|
Daniel Zhu | November 29, 2018 12:42AM |
|
rick reynolds | December 04, 2018 11:05AM |
|
Daniel Zhu | December 11, 2018 02:19PM |
