AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
katkaz
February 18, 2019 10:58AM
Hi,
I was running preprocessing on set of resting-state data and run into issue with 3dDeconvolve on one of the subjects while it seems to be fine for others.
Below is the command and the error, do you have any suggestions what could be causing the problem?

Best regards and thanks,
Kasia

3dDeconvolve -input pb04.fmri_name.r01.blur+orig.HEAD -censor censor_fmri_name_combined_2.1D -ortvec bandpass_rall.1D bandpass -ortvec motion_demean.1D mot_demean -ortvec motion_deriv.1D mot_deriv -polort 3 -num_stimts 0 -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.fmri_name -errts errts.fmri_name -x1D_stop -bucket stats.fmri_name

++ 3dDeconvolve extending num_stimts from 0 to 110 due to -ortvec
++ 3dDeconvolve: AFNI version=AFNI_19.0.01 (Jan 22 2019) [64-bit]
++ Authored by: B. Douglas Ward, et al.
++ STAT automask has 428786 voxels (out of 3655125 = 11.7%)
++ Skipping check for initial transients
++ Input polort=3; Longest run=314.0 s; Recommended minimum polort=3 ++ OK ++
++ Number of time points: 157 (before censor) ; 25 (after)
+ Number of parameters: 114 [114 baseline ; 0 signal]
** ERROR: *** Censoring has made regression impossible :( ***
** FATAL ERROR: 3dDeconvolve dies: Insufficient data (25) for estimating 114 parameters
** Program compile date = Jan 22 2019
Reply Quote
RSS
Subject Author Posted

3dDeconvolve Error

katkaz February 18, 2019 10:58AM

Re: 3dDeconvolve Error

ptaylor February 18, 2019 02:18PM