AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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KSO
February 26, 2019 10:48AM
Hi,

After running this command:

align_epi_anat,py -anat t1_file.nii -epi t2_file.nii -epi2anat -anat_has_skull yes -epi_strip None -suffix _aligned -rigid_body -epi_base 0 -giant move

I'm getting this output:
t2_file_aligned+tlrc.BRIK/HEAD

I thought +tlrc output suggested that I was aligning my T2 file to a template. Since I'm aligning to a T1 file, I thought I was supposed to be getting *+orig* as the output. Does it matter?

Thank you!
Subject Author Posted

Trying to Align T2 to T1, getting different outputs

KSO February 26, 2019 10:48AM

Re: Trying to Align T2 to T1, getting different outputs

Daniel Glen February 26, 2019 04:30PM