Hi,
After running this command:
align_epi_anat,py -anat t1_file.nii -epi t2_file.nii -epi2anat -anat_has_skull yes -epi_strip None -suffix _aligned -rigid_body -epi_base 0 -giant move
I'm getting this output:
t2_file_aligned+tlrc.BRIK/HEAD
I thought +tlrc output suggested that I was aligning my T2 file to a template. Since I'm aligning to a T1 file, I thought I was supposed to be getting *+orig* as the output. Does it matter?
Thank you!