AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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tommorin
April 12, 2019 11:57AM
Hello!

I would like to have the Yeo7 and Yeo17 resting state network ROIs in a format that I can view/work with in SUMA. I've been having trouble converting them over from Freesurfer's .annot format into a .niml.dset format. (If there is another format you would recommend, please let me know!) So far, the closest I've come is with the following command: 

FSread_annot -input Yeo2011_7networks_N1000.annot -FScmap Yeo7ColorLUT.txt -FScmaprange 1 7 -hemi lh -dset lh.Yeo2011_7Networks.niml.dset

And the resulting image is attached for your viewing pleasure. (On the bright side, the colors are the right colors!) I look forward to hearing your ideas!

Best,
Tom
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Attachments:
open | download - Yeo7_bad.jpg (101.1 KB)
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Subject Author Posted

Viewing a Freesurfer .annot in SUMA Attachments

tommorin April 12, 2019 11:57AM

Re: Viewing a Freesurfer .annot in SUMA

Daniel Glen April 12, 2019 05:06PM

Re: Viewing a Freesurfer .annot in SUMA

meghan_robinson April 15, 2019 10:37AM