AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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RParker89
April 27, 2019 06:50AM
Hi all,

I am currently having issues installing AFNI on Ubuntu 18.04. Following the steps here (https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/install_instructs/steps_linux_ubuntu18.html), I get to the 'Install AFNI binaries' section, but encounter this error message:



-- running @update.afni.binaries version 3.8, March 15, 2019
-- no current AFNI package found in path...
-- install dir: using default ~/abin
-- any downloads will be from [afni.nimh.nih.gov] via curl -O -f

-- attempting to install package linux_ubuntu_16_64 under
install dir: /root/abin...
-- have install dir
deleting old temporary directory...
++ working in new temp dir, .tmp.install
++ getting install prog: curl -O -f linux_ubuntu_16_64/@update.afni.binaries ...
curl -O -f [afni.nimh.nih.gov]
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 40307 100 40307 0 0 93519 0 --:--:-- --:--:-- --:--:-- 93519
-- fixing lost permissions on @update.afni.binaries
++ using updated @update.afni.binaries, instead...

++ running: tcsh tmp.@update.afni.binaries -no_recur -package linux_ubuntu_16_64 -do_extras
-- running tmp.@update.afni.binaries version 3.8, March 15, 2019
-- no current AFNI package found in path...
-- install dir: using default ~/abin
-- any downloads will be from [afni.nimh.nih.gov] via curl -O -f

-- attempting to install package linux_ubuntu_16_64 under
install dir: /root/abin...
-- have install dir
deleting old temporary directory...
++ working in new temp dir, .tmp.install
-- skipping update of tmp.@update.afni.binaries
++ downloading test file: curl -O -f linux_ubuntu_16_64/afni ...
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 12.4M 100 12.4M 0 0 9479k 0 0:00:01 0:00:01 --:--:-- 9479k

++ update needed, installing...

++ downloading full package: curl -O -f linux_ubuntu_16_64.tgz ...
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 1125M 100 1125M 0 0 33.4M 0 0:00:33 0:00:33 --:--:-- 32.0M
++ extracting package linux_ubuntu_16_64.tgz...
++ backing up current binaries to auto_backup.linux_ubuntu_16_64
deleting previous backup directory, auto_backup.linux_ubuntu_16_64 ...
++ installing new binaries...
then: then/endif not found.



What's strange is that I have used the exact same build process previously with no error. I am actually building AFNI within a Docker container, and have made no changes to the Dockerfile since my last successful build. I've also tried using a previously-downloaded version of linux_ubuntu_16_64.tgz in combination with the -local_package flag, but the error persists.

Does anyone have any suggestions?

Best wishes,

Richard
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Subject Author Posted

AFNI install issue (Ubuntu18.04)

RParker89 April 27, 2019 06:50AM

Re: AFNI install issue (Ubuntu18.04)

rick reynolds April 27, 2019 11:23AM

Re: AFNI install issue (Ubuntu18.04)

RParker89 April 28, 2019 05:52AM

Re: AFNI install issue (Ubuntu18.04)

rick reynolds April 28, 2019 08:28AM