AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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lavr
May 06, 2019 09:06AM
Hi,

I have an issue with the -resid option running 3dMVM program. Here's my script:

3dMVM -prefix VBM_WM_corr.nii -jobs 8 \
-bsVars "ME*Sex+Age+TIV" \
-qVars "ME,Age,TIV" \
-qVarCenters '21.94,24.16,1376.64' \
-mask "mask.nii" \
-resid "WM_6mm_corr_resid.nii" \
-dataTable \
The rest is the data table structure itself so I'll just skip it, it's intact because the program runs freely without the -resid option.

When I run the script, here's what the terminal shows:
** Error:
Expecting 1 parameters for option "-mask".
Have 3 parameter(s) in string "mask.nii -resid WM_6mm_corr_resid.nii" instead.
NOTE that -resid in bad option above is not a recognized option.

** Error:
Error parsing arguments. See 3dMVM -help for details.

Does anyone happen to have a clue what could be wrong?

I appreciate the help in advance,
Michal
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Subject Author Posted

Problem with -resid option in 3dMVM

lavr May 06, 2019 09:06AM

Re: Problem with -resid option in 3dMVM

gang May 06, 2019 06:09PM

Re: Problem with -resid option in 3dMVM

lavr May 09, 2019 06:55AM

Re: Problem with -resid option in 3dMVM

gang May 09, 2019 05:23PM

Re: Problem with -resid option in 3dMVM

lavr May 14, 2019 08:39AM