AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 12, 2019 11:45AM
Hi!

I am getting a few error messages when attempting to run a script to contrast activity across conditions. Here is the script I am running:
3dDeconvolve -force_TR 2 -input scaled_allruns+orig -mask retrieval_mask+orig -concat '1D: 0 60 120 180 240 300' \
> -polort 1 \
> -num_stimts 4 \
> -stim_times 1 stimtimes_list 'BLOCK(2,1)' \
> -stim_times 2 stimtimes_write 'BLOCK(2,1)' \
> -stim_times 3 stimtimes_draw 'BLOCK(2,1)' \
> -stim_times 4 stimtimes_new 'BLOCK(2,1)' \
> -stim_label 1 write_tar \
> -stim_label 2 list_tar \
> -stim_label 3 draw_tar \
> -stim_label 4 new_tar \
> -gltsym 'SYM: draw_tar -write_tar' \
> -gltsym 'SYM: draw_tar -list_tar' \
> -gltsym 'SYM: draw_tar -new_tar' \
> -gltsym 'SYM: list_tar -write_tar' \
> -gltsym 'SYM: list_tar -new_tar' \
> -gltsym 'SYM: write_tar -new_tar' \
> -glt_label 1 draw_write \
> -glt_label 2 draw_list \
> -glt_label 3 draw_new \
> -glt_label 4 list_write \
> -glt_label 5 list_new \
> -glt_label 6 write_new \
> -fitts fitts_event \
> -fout -tout -rout -bucket decon_sa_event \
> -x1D X.xmat.1D -xjpeg X.jpg

Here is the error I am getting:
** ERROR: mri_read_ascii_ragged_fvect: couldn't open file stimtimes_list
** FATAL ERROR: '-stim_times 1' can't read file 'stimtimes_list' [nopt=15]

I've checked to ensure that the stimtimes files are properly named, so I am unsure how to proceed. Please advise.
Thank you,
Nicole
Subject Author Posted

Help: fatal error when contrasting activity across conditions

nstuart July 12, 2019 11:45AM

Re: Help: fatal error when contrasting activity across conditions

rick reynolds July 14, 2019 09:30AM

Re: Help: fatal error when contrasting activity across conditions

nstuart July 14, 2019 10:03AM