AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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dowdlelt
July 29, 2019 10:55AM
Hi folks,

I am attempting to use the new 3dICC program but running into the following error: 

Error in if (!is.na(lop$dataStr$tStat)) inDataV <- array(apply(inDataV,  : 
  argument is of length zero
Execution halted

It apears to start off correctly, here is the full output - though is it missing the contingency tables? 
Read 163 items

++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
20 subjects :  GM1001 GM1002 GM1003 GM1004 GM1005 GM1006 GM1007 GM1009 GM1010 GM1011 GM1012 GM1013 GM1014 GM1015 GM1016 GM1017 GM1018 GM1019 GM1020 GM1021 
40 response values
2 levels for factor Session : V1 V2 

Contingency tables of subject distributions among the categorical variables:

***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++

Reading input files now...

Reading input files for effect estimates: Done!

Error in if (!is.na(lop$dataStr$tStat)) inDataV <- array(apply(inDataV,  : 
  argument is of length zero
Execution halted

3dICC reads the files and reports all other values correctly. This run is using a data table that worked with the ICC implementation in 3dLME previously. Here is the bulk of the code 
3dICC -prefix RightVRest_ICC_test \
-jobs 4        \
-model  "1+(1|Session)+(1|Subj)" \
-mask /Volumes/alexandria/hypnos/morpheus/gait_mate/models/afni/group_mask.nii.gz \
-dataTable \
Subj Session InputFile \
GM1001 V1 /Volumes/alexandria/hypnos/morpheus/gait_mate/models/afni/sub-GM1001_model-icorLVe_ses-one.results/stats.GM1001_ses-one_REML_nods+tlrc.HEAD'[25]' \
GM1001 V2 /Volumes/alexandria/hypnos/morpheus/gait_mate/models/afni/sub-GM1001_model-icorLVe_ses-two.results/stats.GM1001_ses-two_REML_nods+tlrc.HEAD'[25]' \
[...]
GM1021 V2 /Volumes/alexandria/hypnos/morpheus/gait_mate/models/afni/sub-GM1021_model-icorLVe_ses-two.results/stats.GM1021_ses-two_REML_nods+tlrc.HEAD'[25]'

AFNI version details, just updated this am. 
afni --version
Precompiled binary macos_10.12_local: Jul 26 2019 (Version AFNI_19.2.06 'Claudius')
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Subject Author Posted

Difficulties with 3dICC

dowdlelt July 29, 2019 10:55AM

Re: Difficulties with 3dICC

gang July 29, 2019 11:11AM

Re: Difficulties with 3dICC

dowdlelt July 29, 2019 02:33PM