AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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lfernandino
November 25, 2019 06:22PM
Dear AFNI team,

We are using AFNI_proc.py to preprocess our fMRI data and it seems to be working pretty well. However, starting from the 3dNwarpApply step in the -blip block, the output changes from short datum format to float format, and we would like to keep everything in short format to save disk space. One option would be to edit the shell script created by AFNI_proc.py for each subject to add the '-short' tag to the 3dNwarpApply command before running it, but we were wondering if it is possible to set that option in the AFNI_proc.py command itself. Any suggestions would be appreciated!

Thank you,

Leo Fernandino
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Keeping output in 'short' format with AFNI_proc.py

lfernandino November 25, 2019 06:22PM

Re: Keeping output in 'short' format with AFNI_proc.py

rick reynolds December 09, 2019 05:22PM