AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
dpagliaccio
January 29, 2020 05:14PM
I am trying to run afni_proc on HCP pipeline output in CIFTI space - specifically creating parcellated timeseries for a particular atlas and converting to a 'fake' nifti format using workbench tools. The resulting input files to afni_proc are #ofROIs x 1 x 1 size .nii files. When afni_proc copies the data in the first step to create pb00 files, 3dTcat is automatically turning this into a .1D file and then afni_proc crashes because the next steps can't find the correct input (i.e. 3dToutcount can't open pb00...+tlrc)
Any thoughts on how to remedy or force 3dTcat to output as .nii?
Reply Quote
RSS
Subject Author Posted

afni_proc on ptseries, 3dTcat issue

dpagliaccio January 29, 2020 05:14PM

Re: afni_proc on ptseries, 3dTcat issue

rick reynolds January 30, 2020 09:16AM