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Dear AFNI users-

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 14, 2020 12:47PM
Hi

can someone help me with my 3dLME issue?

I have an experiment where each subject performs 2 conditions - each having 2 levels. I also have 2 groups. I want to use 3dLME, with age as a covariate. We want to model for diagnosis (ADHD NT), age + load (3 and 4) and direction (forward and backward). We wanted to look at fixed effects of diagnosis, age, load, direction, and their interactions and random intercept and slope for subject.

I wrote the script below for this. Though it tested okay script tool, it hangs at model specification. So I also tried -ranEff 'Subj' and this gives me an error saying the Variable Subj was not found (But I copied the name from the data table). What am I missing?

3dLME -prefix ${output} -jobs 5 \
-model 'Dx*Direction*Number*Age' \
-ranEff '~1+Subj' \
-SS_type 3 \
-num_glt 48 \
-qVars 'Age' \
-gltLabel 1 ADHDvTD_BackvForw -gltCode 1 'Dx : 1*ADHD -1*TD Direction : -1*Forward 1*Backward' \
-gltLabel 2 ADHDvTD_4sv3s -gltCode 2 'Dx : 1*ADHD -1*TD Number : -1*Three 1*Four' \
-gltLabel 3 inForw_ADHDvTD -gltCode 3 'Direction : 1*Forward Dx : 1*ADHD -1*TD' \
-gltLabel 4 inBack_ADHDvTD -gltCode 4 'Direction : 1*Backward Dx : 1*ADHD -1*TD' \
-gltLabel 5 in4s_ADHDvTD -gltCode 5 'Number : 1*Four Dx : 1*ADHD -1*TD' \
-gltLabel 6 in3s_ADHDvTD -gltCode 6 'Number : 1*Three Dx : 1*ADHD -1*TD' \
-gltLabel 7 inForw3_ADHDvTD -gltCode 7 'Direction : 1*Forward Number : 1*Three Dx : 1*ADHD -1*TD' \
-gltLabel 8 inForw4_ADHDvTD -gltCode 8 'Direction : 1*Forward Number : 1*Four Dx : 1*ADHD -1*TD' \
-gltLabel 9 inBack3_ADHDvTD -gltCode 9 'Direction : 1*Backward Number : 1*Three Dx : 1*ADHD -1*TD' \
-gltLabel 10 inBack4_ADHDvTD -gltCode 10 'Direction : 1*Backward Number : 1*Four Dx : 1*ADHD -1*TD' \
-gltLabel 11 InForward_ADHDvTD_4sv3s -gltCode 11 'Direction : 1*Forward Number : -1*Three 1*Four Dx : 1*ADHD -1*TD' \
-gltLabel 12 InBackward_ADHDvTD_4sv3s -gltCode 12 'Direction : 1*Backward Number : -1*Three 1*Four Dx : 1*ADHD -1*TD' \
-gltLabel 13 In3s_ADHDvTD_BackvForw -gltCode 13 'Direction : -1*Forward 1*Backward Number : 1*Three Dx : 1*ADHD -1*TD' \
-gltLabel 14 In4s_ADHDvTD_BackvForw -gltCode 14 'Direction : -1*Forward 1*Backward Number : 1*Four Dx : 1*ADHD -1*TD' \
-gltLabel 15 Age_BvF -gltCode 15 'Direction : -1*Forward 1*Backward Age :' \
-gltLabel 16 Age_4v3 -gltCode 16 'Number : -1*Three 1*Four Age :' \
-gltLabel 17 Age_TD_BvF -gltCode 17 'Dx : 1*TD Direction : -1*Forward 1*Backward Age :' \
-gltLabel 18 Age_AD_BvF -gltCode 18 'Dx : 1*ADHD Direction : -1*Forward 1*Backward Age :' \
-gltLabel 19 Age_TD_4v3 -gltCode 19 'Dx : 1*TD Number : -1*Four 1*Three Age :' \
-gltLabel 20 Age_AD_4v3 -gltCode 20 'Dx : 1*ADHD Number : -1*Four 1*Three Age :' \
-gltLabel 21 InADHD_BackvForw -gltCode 21 'Dx : 1*ADHD Direction : -1*Forward 1*Backward' \
-gltLabel 22 InADHD_4sv3s -gltCode 22 'Dx : 1*ADHD Number : -1*Three 1*Four' \
-gltLabel 23 InTD_BackvForw -gltCode 23 'Dx : 1*TD Direction : -1*Forward 1*Backward' \
-gltLabel 24 InTD_4sv3s -gltCode 24 'Dx : 1*TD Number : -1*Three 1*Four' \
-gltLabel 25 InADHD_F_4v3 -gltCode 25 'Dx : 1*ADHD Direction : 1*Forward Number : -1*Three 1*Four' \
-gltLabel 26 InADHD_B_4v3 -gltCode 26 'Dx : 1*ADHD Direction : 1*Backward Number : -1*Three 1*Four' \
-gltLabel 27 InADHD_3_BvF -gltCode 27 'Dx : 1*ADHD Number : 1*Three Direction : -1*Forward 1*Backward' \
-gltLabel 28 InADHD_4_BvF -gltCode 28 'Dx : 1*ADHD Number : 1*Four Direction : -1*Forward 1*Backward' \
-gltLabel 29 InTD_F_4v3 -gltCode 29 'Dx : 1*TD Direction : 1*Forward Number : -1*Three 1*Four' \
-gltLabel 30 InTD_B_4v3 -gltCode 30 'Dx : 1*TD Direction : 1*Backward Number : -1*Three 1*Four' \
-gltLabel 31 InTD_3_BvF -gltCode 31 'Dx : 1*TD Number : 1*Three Direction : -1*Forward 1*Backward' \
-gltLabel 32 InTD_4_BvF -gltCode 32 'Dx : 1*TD Number : 1*Four Direction : -1*Forward 1*Backward' \
-gltLabel 33 InADHD_Forward -gltCode 33 'Dx : 1*ADHD Direction : 1*Forward' \
-gltLabel 34 InADHD_Backward -gltCode 34 'Dx : 1*ADHD Direction : 1*Backward' \
-gltLabel 35 InADHD_3s -gltCode 35 'Dx : 1*ADHD Number : 1*Three' \
-gltLabel 36 InADHD_4s -gltCode 36 'Dx : 1*ADHD Number : 1*Four' \
-gltLabel 37 InADHD_Forward3 -gltCode 37 'Dx : 1*ADHD Number : 1*Three Direction : 1*Forward' \
-gltLabel 38 InADHD_Forward4 -gltCode 38 'Dx : 1*ADHD Number : 1*Four Direction : 1*Forward' \
-gltLabel 39 InADHD_Backward3 -gltCode 39 'Dx : 1*ADHD Number : 1*Three Direction : 1*Backward' \
-gltLabel 40 InADHD_Backward4 -gltCode 40 'Dx : 1*ADHD Number : 1*Four Direction : 1*Backward' \
-gltLabel 41 InTD_Forward -gltCode 41 'Dx : 1*TD Direction : 1*Forward' \
-gltLabel 42 InTD_Backward -gltCode 42 'Dx : 1*TD Direction : 1*Backward' \
-gltLabel 43 InTD_3s -gltCode 43 'Dx : 1*TD Number : 1*Three' \
-gltLabel 44 InTD_4s -gltCode 44 'Dx : 1*TD Number : 1*Four' \
-gltLabel 45 InTD_Forward3 -gltCode 45 'Dx : 1*TD Number : 1*Three Direction : 1*Forward' \
-gltLabel 46 InTD_Forward4 -gltCode 46 'Dx : 1*TD Number : 1*Four Direction : 1*Forward' \
-gltLabel 47 InTD_Backward3 -gltCode 47 'Dx : 1*TD Number : 1*Three Direction : 1*Backward' \
-gltLabel 48 InTD_Backward4 -gltCode 48 'Dx : 1*TD Number : 1*Four Direction : 1*Backward' \
-dataTable \
Subj Dx Age Direction Number InputFile \
MS1049 ADHD 16 Backward Four stats.ForvBack.all2mm.instruct6s.MS1049+tlrc'[10]' \
Subject Author Posted

3dLME using subj in random effects

prerona February 14, 2020 12:47PM

Re: 3dLME using subj in random effects

gang February 14, 2020 02:41PM

Re: 3dLME using subj in random effects

prerona February 14, 2020 04:21PM

Re: 3dLME using subj in random effects

gang February 14, 2020 05:46PM

Re: 3dLME using subj in random effects

prerona February 17, 2020 08:25PM

Re: 3dLME using subj in random effects

gang February 18, 2020 03:58PM