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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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egarza

February 27, 2020 05:17PM

Registered: 4 years ago
Posts: 4

Hi,

I'm trying to setup a Mixed Model with 1 between-subject factor (group: SHAM vs REAL) and 1 within-subjects factor (stage: T0 vs T1). The input files are all rsfMRI seed-based correlations converted to Z maps.

I keep getting Model Failure but I cannot find the mistake. Any help would be appreciated.

AFNI Version

afni -ver
Precompiled binary linux_ubuntu_16_64: Feb 24 2020 (Version AFNI_20.0.16 'Galba')

Call

bash mixedmodel_afni

Code

3dMVM -prefix TMSmixed_results -jobs 1 \
        -bsVars 'group' \
        -wsVars 'stage' \
        -mask /media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/data/normative_maps/rois/vmPFC_bin.nii.gz \
        -num_glt 5 \
        -gltLabel 1 interaction -gltCode 1 'group: 1*SHAM -1*REAL stage: 1*t1 -1*t0' \
        -gltLabel 2 sham_t0_vs_t1 -gltCode 2 'group: 1*SHAM stage: 1*t1 -1*t0' \
        -gltLabel 3 real_t0_vs_t1 -gltCode 3 'group: 1*REAL stage: 1*t1 -1*t0' \
        -gltLabel 4 t1-sham_vs_real -gltCode 4 'group: 1*SHAM -1*REAL stage: 1*t1' \
        -gltLabel 5 t0-sham_vs_real -gltCode 5 'group: 1*SHAM -1*REAL stage: 1*t0' \
        -dataTable @/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/dataTable.txt

dataTable

Subj	group	stage	InputFile  \
1	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/1_ses-t0_stdlDLPFC_Z.nii.gz \
1	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/1_ses-t1_stdlDLPFC_Z.nii.gz \
2	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/2_ses-t0_stdlDLPFC_Z.nii.gz \
2	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/2_ses-t1_stdlDLPFC_Z.nii.gz \
3	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/3_ses-t0_stdlDLPFC_Z.nii.gz \
3	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/3_ses-t1_stdlDLPFC_Z.nii.gz \
4	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/4_ses-t0_stdlDLPFC_Z.nii.gz \
4	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/4_ses-t1_stdlDLPFC_Z.nii.gz \
6	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/6_ses-t0_stdlDLPFC_Z.nii.gz \
6	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/6_ses-t1_stdlDLPFC_Z.nii.gz \
7	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/7_ses-t0_stdlDLPFC_Z.nii.gz \
7	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/7_ses-t1_stdlDLPFC_Z.nii.gz \
8	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/8_ses-t0_stdlDLPFC_Z.nii.gz \
8	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/8_ses-t1_stdlDLPFC_Z.nii.gz \
10	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/10_ses-t0_stdlDLPFC_Z.nii.gz \
10	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/10_ses-t1_stdlDLPFC_Z.nii.gz \
11	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/11_ses-t0_stdlDLPFC_Z.nii.gz \
11	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/11_ses-t1_stdlDLPFC_Z.nii.gz \
12	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/12_ses-t0_stdlDLPFC_Z.nii.gz \
12	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/12_ses-t1_stdlDLPFC_Z.nii.gz \
13	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/13_ses-t0_stdlDLPFC_Z.nii.gz \
13	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/13_ses-t1_stdlDLPFC_Z.nii.gz \
15	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/15_ses-t0_stdlDLPFC_Z.nii.gz \
15	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/15_ses-t1_stdlDLPFC_Z.nii.gz \
16	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/16_ses-t0_stdlDLPFC_Z.nii.gz \
16	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/16_ses-t1_stdlDLPFC_Z.nii.gz \
17	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/17_ses-t0_stdlDLPFC_Z.nii.gz \
17	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/17_ses-t1_stdlDLPFC_Z.nii.gz \
18	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/18_ses-t0_stdlDLPFC_Z.nii.gz \
18	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/18_ses-t1_stdlDLPFC_Z.nii.gz \
19	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/19_ses-t0_stdlDLPFC_Z.nii.gz \
19	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/19_ses-t1_stdlDLPFC_Z.nii.gz \
20	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/20_ses-t0_stdlDLPFC_Z.nii.gz \
20	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/20_ses-t1_stdlDLPFC_Z.nii.gz \
21	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/21_ses-t0_stdlDLPFC_Z.nii.gz \
21	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/21_ses-t1_stdlDLPFC_Z.nii.gz \
22	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/22_ses-t0_stdlDLPFC_Z.nii.gz \
22	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/22_ses-t1_stdlDLPFC_Z.nii.gz \
23	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/23_ses-t0_stdlDLPFC_Z.nii.gz \
23	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/23_ses-t1_stdlDLPFC_Z.nii.gz \
24	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/24_ses-t0_stdlDLPFC_Z.nii.gz \
24	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/24_ses-t1_stdlDLPFC_Z.nii.gz \
25	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/25_ses-t0_stdlDLPFC_Z.nii.gz \
25	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/25_ses-t1_stdlDLPFC_Z.nii.gz \
26	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/26_ses-t0_stdlDLPFC_Z.nii.gz \
26	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/26_ses-t1_stdlDLPFC_Z.nii.gz \
27	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/27_ses-t0_stdlDLPFC_Z.nii.gz \
27	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/27_ses-t1_stdlDLPFC_Z.nii.gz \
30	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/30_ses-t0_stdlDLPFC_Z.nii.gz \
30	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/30_ses-t1_stdlDLPFC_Z.nii.gz \
31	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/31_ses-t0_stdlDLPFC_Z.nii.gz \
31	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/31_ses-t1_stdlDLPFC_Z.nii.gz \
32	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/32_ses-t0_stdlDLPFC_Z.nii.gz \
32	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/32_ses-t1_stdlDLPFC_Z.nii.gz \
33	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/33_ses-t0_stdlDLPFC_Z.nii.gz \
33	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/33_ses-t1_stdlDLPFC_Z.nii.gz \
34	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/34_ses-t0_stdlDLPFC_Z.nii.gz \
34	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/34_ses-t1_stdlDLPFC_Z.nii.gz \
36	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/36_ses-t0_stdlDLPFC_Z.nii.gz \
36	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/36_ses-t1_stdlDLPFC_Z.nii.gz \
37	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/37_ses-t0_stdlDLPFC_Z.nii.gz \
37	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/37_ses-t1_stdlDLPFC_Z.nii.gz \
39	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/39_ses-t0_stdlDLPFC_Z.nii.gz \
39	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/39_ses-t1_stdlDLPFC_Z.nii.gz \
41	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/41_ses-t0_stdlDLPFC_Z.nii.gz \
41	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/41_ses-t1_stdlDLPFC_Z.nii.gz \
42	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/42_ses-t0_stdlDLPFC_Z.nii.gz \
42	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/42_ses-t1_stdlDLPFC_Z.nii.gz \
43	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/43_ses-t0_stdlDLPFC_Z.nii.gz \
43	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/43_ses-t1_stdlDLPFC_Z.nii.gz \
45	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/45_ses-t0_stdlDLPFC_Z.nii.gz \
45	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/45_ses-t1_stdlDLPFC_Z.nii.gz \
46	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/46_ses-t0_stdlDLPFC_Z.nii.gz \
46	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/46_ses-t1_stdlDLPFC_Z.nii.gz \
47	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/47_ses-t0_stdlDLPFC_Z.nii.gz \
47	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/47_ses-t1_stdlDLPFC_Z.nii.gz \
48	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/48_ses-t0_stdlDLPFC_Z.nii.gz \
48	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/48_ses-t1_stdlDLPFC_Z.nii.gz \
49	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/49_ses-t0_stdlDLPFC_Z.nii.gz \
49	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/49_ses-t1_stdlDLPFC_Z.nii.gz \
50	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/50_ses-t0_stdlDLPFC_Z.nii.gz \
50	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/50_ses-t1_stdlDLPFC_Z.nii.gz \
52	SHAM	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/52_ses-t0_stdlDLPFC_Z.nii.gz \
52	SHAM	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/52_ses-t1_stdlDLPFC_Z.nii.gz \
53	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/53_ses-t0_stdlDLPFC_Z.nii.gz \
53	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/53_ses-t1_stdlDLPFC_Z.nii.gz \
54	REAL	t0	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/54_ses-t0_stdlDLPFC_Z.nii.gz \
54	REAL	t1	/media/egarza/Elements2/projects/ADDIMEX_TMS/FC_CLIN/3-Experiment/analysis/AFNI/Zmaps/54_ses-t1_stdlDLPFC_Z.nii.gz \

Error msg

Read 443 items
Loading required package: lme4
Loading required package: Matrix
Registered S3 methods overwritten by 'car':
  method                          from
  influence.merMod                lme4
  cooks.distance.influence.merMod lme4
  dfbeta.influence.merMod         lme4
  dfbetas.influence.merMod        lme4
************
Welcome to afex. For support visit: [afex.singmann.science]
- Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
- Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
- 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
- NEWS: library('emmeans') now needs to be called explicitly!
- Get and set global package options with: afex_options()
- Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
- For example analyses see: browseVignettes("afex")
************

Attaching package: ‘afex’

The following object is masked from ‘package:lme4’:

    lmer

Loading required package: car
Loading required package: carData

++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
44 subjects :  1 10 11 12 13 15 16 17 18 19 2 20 21 22 23 24 25 26 27 3 30 31 32 33 34 36 37 39 4 41 42 43 45 46 47 48 49 50 52 53 54 6 7 8 
88 response values
2 levels for factor group : REAL SHAM 
2 levels for factor stage : t0 t1 
5 post hoc tests

Contingency tables of subject distributions among the categorical variables:

      stage
group  t0 t1
  REAL 24 24
  SHAM 20 20

Tabulation of subjects against each of the categorical variables:
~~~~~~~~~~~~~~
lop$nSubj vs group:
    
     REAL SHAM
  1     0    2
  10    0    2
  11    2    0
  12    0    2
  13    0    2
  15    2    0
  16    2    0
  17    2    0
  18    0    2
  19    0    2
  2     0    2
  20    2    0
  21    2    0
  22    0    2
  23    2    0
  24    2    0
  25    2    0
  26    2    0
  27    0    2
  3     2    0
  30    0    2
  31    2    0
  32    2    0
  33    0    2
  34    2    0
  36    0    2
  37    2    0
  39    2    0
  4     2    0
  41    2    0
  42    0    2
  43    2    0
  45    0    2
  46    0    2
  47    0    2
  48    2    0
  49    2    0
  50    0    2
  52    0    2
  53    2    0
  54    2    0
  6     0    2
  7     2    0
  8     0    2

~~~~~~~~~~~~~~
lop$nSubj vs stage:
    
     t0 t1
  1   1  1
  10  1  1
  11  1  1
  12  1  1
  13  1  1
  15  1  1
  16  1  1
  17  1  1
  18  1  1
  19  1  1
  2   1  1
  20  1  1
  21  1  1
  22  1  1
  23  1  1
  24  1  1
  25  1  1
  26  1  1
  27  1  1
  3   1  1
  30  1  1
  31  1  1
  32  1  1
  33  1  1
  34  1  1
  36  1  1
  37  1  1
  39  1  1
  4   1  1
  41  1  1
  42  1  1
  43  1  1
  45  1  1
  46  1  1
  47  1  1
  48  1  1
  49  1  1
  50  1  1
  52  1  1
  53  1  1
  54  1  1
  6   1  1
  7   1  1
  8   1  1

***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++

Reading input files now...

Reading input files: Done!

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.

~~~~~~~~~~~~~~~~~~~ Model test failed! ~~~~~~~~~~~~~~~~~~~
Possible reasons:

0) Make sure that R packages afex and phia have been installed. See the 3dMVM
help documentation for more details.

1) Inappropriate model specification with options -bsVars, -wsVars, or -qVars.
Note that within-subject or repeated-measures variables have to be declared
with -wsVars.

2) Incorrect specifications in general linear test coding with -gltCode.

3) Mistakes in data table. Check the data structure shown above, and verify
whether there are any inconsistencies.

4) Inconsistent variable names which are case sensitive. For example, factor
named Group in model specification and then listed as group in the table header
would cause grief for 3dMVM.

5) Not enough number of subjects. This may happen when there are two or more
withi-subject factors. For example, a model with two within-subject factors with
m and n levels respectively requires more than (m-1)*(n-1) subjects to be able to
model the two-way interaction with the multivariate approach.


** Error: 
   Quitting due to model test failure...

Edited 1 time(s). Last edit at 02/27/2020 05:26PM by egarza.

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Subject	Author	Posted
3dMVM 2x2 failure	egarza	February 27, 2020 05:17PM
Re: 3dMVM 2x2 failure	gang	February 27, 2020 08:40PM
Re: 3dMVM 2x2 failure	egarza	February 28, 2020 10:14AM
Re: 3dMVM 2x2 failure	gang	February 28, 2020 12:42PM
Re: 3dMVM 2x2 failure	egarza	February 28, 2020 01:28PM
Re: 3dMVM 2x2 failure	gang	February 28, 2020 02:09PM
Re: 3dMVM 2x2 failure	egarza	February 28, 2020 02:57PM