AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 17, 2020 04:30PM
AFNI showing different screen ( please check first image) only for my login. Its pulling some screen from somewhere and showing.

When I login and run afni for Other Users its normal ( please check the second image). I can see afni with all brain related images.

For all users --- afni_system_check.py -check_all is SAME. Please help me.

-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 3.10.0-1062.1.2.el7.x86_64
version: #1 SMP Mon Sep 16 14:19:51 EDT 2019
distribution: Red Hat Enterprise Linux Server 7.7 Maipo
number of CPUs: 8
apparent login shell: bash
shell RC file: .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /usr/local/afni/afni
afni version : Precompiled binary linux_openmp_64: Mar 12 2020
: AFNI_20.0.19 'Galba'
AFNI_version.txt : AFNI_20.0.19, linux_openmp_64, Mar 12 2020
which python : /bin/python
python version : 2.7.5
which R : /bin/R
R version : R version 3.6.0 (2019-04-26) -- "Planting of a Tree"
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/usr/local/afni/afni)
R : 1 (/usr/bin/R)
python : 2
/usr/bin/python2.7
/usr/bin/anaconda3/bin/python3.7
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/anaconda3/bin/python3.7)


testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
3dMVM : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : success

R RHOME : /usr/lib64/R

checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
++ module loaded: PyQt4
module file : /usr/lib64/python2.7/site-packages/PyQt4/__init__.pyc

** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is not required, but is desirable

-------------------------------- env vars --------------------------------
PATH = /usr/bin/anaconda3/condabin:/usr/lib64/qt-3.3/bin:/sbin:/bin:/usr/bin:/usr/local/bin:/usr/local/sbin:/usr/sbin:/usr/local/afni:/usr/bin/anaconda3/bin:/usr/bin/anaconda3/condabin:/home/shiva/.local/bin:/home/shiva/bin:/usr/local/afni:/usr/bin/anaconda3/bin:/usr/bin/anaconda3/condabin:/home/shiva/.local/bin:/home/shiva/bin:/usr/local/afni:/usr/bin/anaconda3/bin:/usr/bin/anaconda3/condabin:/home/shiva/.local/bin:/home/shiva/bin:/usr/local/afni:/usr/bin/anaconda3/bin:/usr/bin/anaconda3/condabin

PYTHONPATH =
R_LIBS = /usr/local/R

LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /usr/local/afni

------------------------------ OS specific -------------------------------
which yum : /bin/yum
yum version : 3.4.3


========================= summary, please fix: =========================
* login shell 'bash', trusting user to translate code examples from 'tcsh'
* insufficient data for AFNI bootcamp
Attachments:
open | download - afni abnormal screen .jpg (214 KB)
open | download - afni normal screen.jpg (325.9 KB)
Subject Author Posted

AFNI showing different(abnormal) screen when I login and run afni .. for other users its normal. Attachments

shiva143 March 17, 2020 04:30PM

Re: AFNI showing different(abnormal) screen when I login and run afni .. for other users its normal.

ptaylor March 17, 2020 04:50PM

Re: AFNI showing different(abnormal) screen when I login and run afni .. for other users its normal.

shiva143 March 17, 2020 05:22PM

Re: AFNI showing different(abnormal) screen when I login and run afni .. for other users its normal.

shiva143 March 18, 2020 11:24AM

Re: AFNI showing different(abnormal) screen when I login and run afni .. for other users its normal.

ptaylor March 18, 2020 11:38AM