AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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JW
April 23, 2020 08:42AM
Dear AFNI experts,

Hope all of you are staying safe. I am running 3dLME and am wondering how can I analyze Group by Time effects. I have two groups of subjects (A and B) and both groups have before (pre) and after (post) data. Below is the script I used.

3dLME -prefix 3dLME -jobs 5 \
-model 'Group*Time' -ranEff '~1' -SS_type 3 \
-num_glt 5 \
-gltLabel 1 'Apost-Apre' -gltCode 1 'Group : 1*A Time : 1*post -1*pre' \
-gltLabel 2 'Bpost-Bpre' -gltCode 2 'Group : 1*B Time : 1*post -1*pre' \
-gltLabel 3 'Apre-Bpre' -gltCode 3 'Group : 1*A -1*B Time : 1*pre' \
-gltLabel 4 'Apost-Bpost' -gltCode 4 'Group : 1*A -1*B Time : 1*post' \
-gltLabel 5 'Post-Pre' -gltCode 5 'Time : 1*post -1*pre' \
-mask GMmask+tlrc \
-dataTable \
Subj Group Time InputFile \
0001 A pre 0001.pre/clusterave1_r2z+tlrc \
0001 A post 0001.post/clusterave1_r2z+tlrc \
0002 B pre 0002.pre/clusterave1_r2z+tlrc \
0002 B post 0002.post/clusterave1_r2z+tlrc \
.
.
.
.
.



I could see Group:Time F results in the output data. Could you please let me know if this is the Group by Time effect I am looking for?

Best,
JW
Attachments:
open | download - 1.jpg (144.8 KB)
Subject Author Posted

3dLME Group by Time Effects Attachments

JW April 23, 2020 08:42AM

Re: 3dLME Group by Time Effects

gang April 23, 2020 05:41PM

Re: 3dLME Group by Time Effects

JW April 24, 2020 08:35AM

Re: 3dLME Group by Time Effects

gang April 24, 2020 02:47PM

Re: 3dLME Group by Time Effects

JW April 24, 2020 04:12PM