AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 22, 2020 12:21PM
Hi all,

I want to use 3dClustSim to perform multiple comparisons correction. Before doing so, I need to use 3dFWHMx to approximate the ACF. However, I'm not sure what kind of residual file I should pick up as input file. It will be greatly appreciated if you could give me some advice.

I used lme4 package in R to perform a hierarchical linear modeling for each voxel ( the sample was a group of subjects other than time series). I wonder if I need to use the square residuals (I assumed that sum of square rediduals could be used as a group statistic for residual file) as input for 3dFWHMx or I need to extract the residual for every data point (a subject) and save the complete set of residuals for each voxel, feeding a four-dimensional dataset (3d space for spatial coordinates and the fourth dimension indicating different data point (subject) ) to 3dFWHMx?

Wish somebody could help.

Thanks.

Yovan
Subject Author Posted

The input file for 3dFWHMx

Yovan April 22, 2020 12:21PM

Re: The input file for 3dFWHMx

ptaylor April 27, 2020 10:16AM