AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 07, 2020 12:28AM
Hi

I have 2 questions about my 3dLME analysis. I have pasted the code below

1) When I look at the GLT 1 "ADHDvTD_BackvForw", my resulting clusters are slightly different in peak and cluster size from the F Test between the same factors Diagnosis X Complexity - though the p threshold is the same. Please could someone help me understand why these are different and which one is more accurate?

2) Is it appropriate to report the p threshold, peak and the cluster size - similar to 3dMVM?

Thank you so much for any help

Sincerely

Prerona

3dLME -prefix ${output} -jobs 5 \
-model 'Dx*Direction*Number*Age' \
-ranEff '~1' \
-SS_type 3 \
-num_glt 8 \
-qVars 'Age' \
-gltLabel 1 ADHDvTD_BackvForw -gltCode 1 'Dx : 1*ADHD -1*TD Direction : -1*Forward 1*Backward' \
-gltLabel 2 ADHDvTD_4sv3s -gltCode 2 'Dx : 1*ADHD -1*TD Number : -1*Three 1*Four' \
-gltLabel 3 Age_BvF -gltCode 3 'Direction : -1*Forward 1*Backward Age :' \
-gltLabel 4 Age_4v3 -gltCode 4 'Number : -1*Three 1*Four Age :' \
-gltLabel 5 InADHD_BackvForw -gltCode 5 'Dx : 1*ADHD Direction : -1*Forward 1*Backward' \
-gltLabel 6 InADHD_4sv3s -gltCode 6 'Dx : 1*ADHD Number : -1*Three 1*Four' \
-gltLabel 7 InTD_BackvForw -gltCode 7 'Dx : 1*TD Direction : -1*Forward 1*Backward' \
-gltLabel 8 InTD_4sv3s -gltCode 8 'Dx : 1*TD Number : -1*Three 1*Four' \
Subject Author Posted

3dLME result

prerona May 07, 2020 12:28AM

Re: 3dLME result

gang May 07, 2020 10:09AM

Re: 3dLME result

prerona May 08, 2020 12:08AM

Re: 3dLME result

gang May 08, 2020 04:04PM

Re: 3dLME result

prerona May 09, 2020 12:14AM

Re: 3dLME result

gang May 13, 2020 06:55AM

Re: 3dLME result

prerona May 21, 2020 08:04PM