AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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eji
August 14, 2020 11:08AM
Dear experts,

I am running deterministic tractography with a netrois file that has 318 rois. I am getting the "Killed" message and everything stops abruptly.

Some possibly relevant info: I'm running AFNI on a virtual machine (8 core / 32GB RAM) off Linux. I haven't had memory issues nor have I received the "Killed" message before, but perhaps I was not performing computationally expensive tasks.

Below you will see the commands and the output before it stops abruptly. Could you let me know if this issue is related to my computer or the commands? Many thanks!

eji@nu1:~/projects/spins/preproc/fsl/subjects/w0/SPN01_CMH_0001_01/afni$ 3dTrackID \
> -mode DET \
> -netrois $dtipath/SPN01_CMH_0001_01/mri/parc5002dwi.nii.gz \
> -prefix 3dTrackID_det \
> -dti_in 3dDWItoDT_ \
> -logic OR \
> -overwrite
++ ROI logic type is: OR
++ Tracking mode: DET

++ Number of ROIs in netw[0] = 318
++ No refset labeltable for naming things.
++ SEARCHING for vector files with prefix '3dDWItoDT_*':
FINDING: 'V1' 'V2' 'V3'
++ SEARCHING for scalar files with prefix '3dDWItoDT_*':
FINDING: not:'DT' 'FA' 'L1' not:'L2' not:'L3' 'MD' 'RD'
++ Done with scalar search, found: 4 parameters
--> so will have 15 output data matrices.
++ With '-logic OR', the '-cut_at_rois' option will be automically turned off (-> have '-uncut_at_rois').
++ Tracking progress count: start ...
++ Done tracking, tidying up outputs...
++ From tracking, net[0] has 245598 tracks.
++ Network [0]: [21075]th WM bundle has only one tract!
++ Network [0]: [43818]th WM bundle has only one tract!
Killed
Subject Author Posted

"Killed" during 3dTrackID

eji August 14, 2020 11:08AM

Re: "Killed" during 3dTrackID

ptaylor August 14, 2020 11:55AM

Re: "Killed" during 3dTrackID

eji August 17, 2020 09:11AM

Re: "Killed" during 3dTrackID

ptaylor August 17, 2020 01:49PM

Re: "Killed" during 3dTrackID

eji August 18, 2020 09:01AM

Re: "Killed" during 3dTrackID

ptaylor August 20, 2020 02:27PM

Re: "Killed" during 3dTrackID

eji August 21, 2020 09:00AM

Re: "Killed" during 3dTrackID

ptaylor August 21, 2020 11:36AM