AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 08, 2020 10:29AM
Hello AFNI Gurus,

I am hoping to get some help on two issues I have run into while running 3dMVM

3dMVM -prefix 3dMVM_Intervention_Visit_Contrast -jobs 4 \
-bsVars 'Intervention' \
-wsVars "Visit" \
-SS_type 2 \
-mask mask_resamp+tlrc \
-num_glt 1 \
-gltLabel 1 Con1-Con2_v2-v1 -gltCode 1 'Intervention : 1*Con1 -1*Con2 Visit: 1*v2 -1*v1' \
-dataTable \
Subj Visit Intervention InputFile \
sub1 v1 Con1 stats.sub-1_REML+tlrc[34] \
sub2 v1 Con2 stats.sub2-1_REML+tlrc[34] \
........

The following error comes out:

Error in outList[[1]][[n]] : subscript out of bounds
Calls: process.MVM.opts -> gl_Constr

I am unsure what this means to even attempt to search for a fix.


Secondly I was trying to run another GLT not listed above I ran into the error:

** Error:
Inappropriate coding in test No.1!

for trying to use:

-gltLabel 1 v2-v1 -gltCode 1 'Visit : 1*v2 -1*v1'

am I missing something in the incorrect coding above?

Thanks in advance,
Subject Author Posted

3dMVM help

isospin October 08, 2020 10:29AM

Re: 3dMVM help

gang October 08, 2020 10:43AM

Re: 3dMVM help

isospin October 08, 2020 11:06AM

Re: 3dMVM help

gang October 08, 2020 11:28AM