AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 05, 2020 10:33AM
I am attempting to look at how a behavioural covariate is related to differences in brain activation.
I have a number of glt terms that look at how my quantitative covariate relates to various various conditions and/or contrasts.

But in the output, the maps that include the covariate are, in many cases, identical (both the coefficient maps and the t maps)
My design has two time points, and 2x2 conditions of lexicality (lex) and first/second languages (L1L2).

So the two following glt terms are meant to be looking at how my covariate (a individual measure of sensitivity to word frequency) relates to activation for words in each language

-gltCode L1:wrd:freq 'L1L2 : 1*L1 Lex : 1*wrd freq : ' \
-gltCode L2:wrd:freq 'L1L2 : 1*L2 Lex : 1*wrd freq : ' \

Interestingly, other glts also return identical maps, but ones that are different from the above, so for example the following all return identical maps:

-gltCode L1:prnt:psd:freq 'L1L2 : 1*L1 Lex : 1*psd freq : ' \
-gltCode L2:prnt:psd:freq 'L1L2 : 1*L2 Lex : 1*psd freq : ' \
-gltCode L1:psd:t1:freq 'L1L2 : 1*L1 Lex : 1*psd Time : 1*Time1 freq : ' \
-gltCode L2:psd:t1:freq 'L1L2 : 1*L2 Lex : 1*psd Time : 1*Time1 freq : ' \
-gltCode L1:psd:t3:freq 'L1L2 : 1*L1 Lex : 1*psd Time : 1*Time3 freq : ' \
-gltCode L2:psd:t3:freq 'L1L2 : 1*L2 Lex : 1*psd Time : 1*Time3 freq : ' \

Am I misunderstanding the interpretation of the covariate and what it means in glts such as these?
Thanks
Subject Author Posted

Interpreting output of behavioural covariate

henrybrice November 05, 2020 10:33AM

Re: Interpreting output of behavioural covariate

gang November 05, 2020 08:37PM

Re: Interpreting output of behavioural covariate

henrybrice November 06, 2020 10:18AM

Re: Interpreting output of behavioural covariate

gang November 06, 2020 04:21PM