AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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sondosayyash
January 02, 2021 03:11AM
I have my own .par file from MELODIC, but I was wondering how I can use it in the afni_proc.py command? FSL's MELODIC outputs a .par file, which contains all the motion parameters. I want to regress out these motion parameters. So I'm not sure how to incorporate that into afni_proc.py . Do I need to change the file type to a 1D?

Here's an example code of what I expect to run:

afni_proc.py \
-subj_id sb23.e7.esoteric \
-dsets sb23/epi_r??+orig.HEAD \
-blocks regress \
-copy_anat sb23/sb23_mpra+orig \
-regress_apply_mot_types motionparameters.par \

Can I include the .par file the way I just did?
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Subject Author Posted

Regress out motion parameters for afni_proc.py

sondosayyash January 02, 2021 03:11AM

Re: Regress out motion parameters for afni_proc.py

ptaylor January 02, 2021 03:42PM