AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
abdollahis2
January 30, 2021 10:25AM
Hi AFNI Guru:

I have been using AFNI surfTosurf command on both left and right hemisphere in the following setting:
for hemi in 'lh' 'rh'; do
SurfToSurf \
-i SUMA/std.60.${hemi}.smoothwm.gii \
-i SUMA/${hemi}.smoothwm.gii \
-prefix SUMA/std.60 \
-mapfile SUMA/std.60.${subj}_${hemi}.niml.M2M \
-dset SUMA/${hemi}.lausanne_250.annot.niml.dset \
-output_params NearestNode
rm -r SUMA/std.60.1D
done
so it seems that on the first loop for left hemisphere, the function creates a "std.60.1D" file besides std.60.lh.lausanne_250.annot.niml.dset output and if this file doesn't get deleted, the second loop for right hemisphere wont run. now i have been able to get away by removing this extra file using "rm -r" but i am moving our pipeline to a nipype structure and this extra file is really making thing complicated. i am wondering if there can be an option that deletes this file immediately like --remove_1D_file for command-line options.

Thanks
shervin
Reply Quote
RSS
Subject Author Posted

surfTosurf output 1D file

abdollahis2 January 30, 2021 10:25AM