AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 24, 2021 06:15PM
As the overly-verbose title says, I'm wondering if someone can confirm for me the column order in the x1D file if one uses a convolution with multiple basis functions and stim_times_IM.

3dDeconvolve -input ${FUNC} -mask ${MASK}
-num_stimts 1 \
-stim_times_IM 1 times.1D 'SPMG2(18)' -stim_label 1 Task \
...

For a simple example, say I have a stim_times_IM file that has 3 onsets, and I use the SPMG function. I expect to get a total of 6 regressors, e.g.,

# ColumnLabels = "Run#1Pol#0 ; Run#1Pol#1 ; Run#1Pol#2 ; Task#0 ; Task#1 ; Task#2 ; Task#3 ; Task#4 ; Task#5

Should I assume that Task#0 is the "raw" basis and Task#1 is the temporal derivative for the first onset?

Thanks for your help.

-John
Subject Author Posted

3ddeconvolve column order with multiple basis functions and stim_times_IM

jflournoy February 24, 2021 06:15PM

Re: 3ddeconvolve column order with multiple basis functions and stim_times_IM

gang February 24, 2021 08:19PM

Re: 3ddeconvolve column order with multiple basis functions and stim_times_IM

jflournoy March 02, 2021 03:58PM

Re: 3ddeconvolve column order with multiple basis functions and stim_times_IM Attachments

RWCox March 03, 2021 11:37AM

Re: 3ddeconvolve column order with multiple basis functions and stim_times_IM

jflournoy March 03, 2021 12:04PM

Re: 3ddeconvolve column order with multiple basis functions and stim_times_IM

RWCox March 03, 2021 02:05PM