AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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wsen
July 27, 2021 09:25AM
I have task-based fmri data that has been processed in fsfast, as well as resting state data preprocessed with fmriprep, and then smoothed and denoised using the CONN toolbox. For both of these data sets, I would like to use the output (contrast estimate files for the task based, and fishers Z connectivity maps for resting-state) to do group analysis using 3dLMEr, and then use FWHMx -ACF and 3dClustSim to threshold the results.

Is there any reason bringing data processed in other software packages over the 3dLMEr might be problematic? For example, does 3dLMEr, FWHMx or 3dClustSim make any assumptions about how the data was processed that could be violated by data created in other software?
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3dLMEr for data analyzed outside of afni?

wsen July 27, 2021 09:25AM

Re: 3dLMEr for data analyzed outside of afni?

gang July 28, 2021 03:24PM