AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 23, 2021 09:58AM
Hello! I'm hoping to get insight into an error I'm getting trying to run 3dClusterize. We ran our models in neuropointillist (in R), and then completed our cluster correction with 3dFWHMx/3dClustSim. We're now trying to use 3dClusterize on our neuropointillist output with the command below:

3dClusterize -inset fl.modperson.tvalue.nii.gz -ithr 2 -idat 1 -mask mask.nii.gz -NN 1 -bisided -5 5 -clust_nvox 36 -pref_map ClusterMap_biTHR5nvox36 > attempt1

++ Neighborhood definition (NN=1) accepted
++ User input stat threshold: -5
++ User input stat threshold: 5
** FATAL ERROR: Bad index (too large) for data volume: 1
** Program compile date = Dec 11 2018

Any ideas why we are getting this error? Thanks in advance for any assistance!
Subject Author Posted

3dClusterize error - bad index

Robertsnj August 23, 2021 09:58AM

Re: 3dClusterize error - bad index

ptaylor August 23, 2021 12:53PM

Re: 3dClusterize error - bad index

Robertsnj August 25, 2021 10:23AM

Re: 3dClusterize error - bad index

ptaylor August 25, 2021 12:48PM

Re: 3dClusterize error - bad index

Robertsnj August 26, 2021 09:52AM

Re: 3dClusterize error - bad index

ptaylor August 26, 2021 11:03AM

Re: 3dClusterize error - bad index

Robertsnj August 27, 2021 05:26PM

Re: 3dClusterize error - bad index

ptaylor August 27, 2021 06:00PM

Re: 3dClusterize error - bad index

Robertsnj August 30, 2021 10:13AM

Re: 3dClusterize error - bad index

ptaylor August 30, 2021 10:30AM

Re: 3dClusterize error - bad index

Robertsnj August 30, 2021 10:52AM

Re: 3dClusterize error - bad index

ptaylor August 30, 2021 11:10AM

Re: 3dClusterize error - bad index

Robertsnj August 30, 2021 03:42PM

Re: 3dClusterize error - bad index

ptaylor August 30, 2021 04:05PM