AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 18, 2021 11:59PM
Hi AFNI gurus,

I am having some questions with the outputs of @SSwarper. I am reanalyzing some older data with manually drawn masks. I figured I can refine the manual segmentation running @SSwarper with the -mask_ss and -init_skullstr_off options. In the QC_anatSS.subject.jpg image how closely should the overlay fill and follow the brain? The warped images seem to look good but seeing this makes me wonder a bit. Any help would be greatly appreciated.

-Ben
Attachments:
open | download - sswarpss.JPG (14.8 KB)
Subject Author Posted

@SSwarper help Attachments

isospin August 18, 2021 11:59PM

Re: @SSwarper help

ptaylor August 19, 2021 07:53AM

Re: @SSwarper help

isospin August 19, 2021 08:12AM

Re: @SSwarper help Attachments

isospin August 25, 2021 02:13PM

Re: @SSwarper help

ptaylor August 26, 2021 07:13AM

Re: @SSwarper help

isospin August 26, 2021 08:24AM

Re: @SSwarper help

ptaylor August 26, 2021 11:19AM

Re: @SSwarper help

isospin August 27, 2021 04:10PM

Re: @SSwarper help

ptaylor August 27, 2021 04:46PM