AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
December 15, 2021 06:57PM
Greetings, venerable AFNIstas-

I'm new to the 3dMVM game so please feel free to direct me to a previous thread if you've already answered this. Just want to make sure that our coding matches our questions.

We have two quantitative variables per subject: 1) CSF concentration of the dopamine metabolite homovanillic acid (HVA); and 2) age, which tends to be weakly but significantly correlated with HVA. Within a single group, we'd like to look at the following in relation to some rsfMRI indices:

1. HVA, with the relation between age and the rsfMRI DV accounted for
2. age, with the relation between HVA and the rsfMRI DV accounted for

It seems that this could be handled by the following:

3dMVM \
-prefix Age_HVA \
-bsVars "Age+HVA" \
-qVars "Age,HVA" \
-jobs 4 \
-dataTable \
Subj Age HVA InputFile \
AdP-003-1 54 211 /halfpipe/sub-MDD003/func/task-rest/sub-MDD003_task-rest_feature-dualReg_map-FINDIca_component-12_stat-effect_statmap.nii.gz \
...

Aye or nay?

And, a follow-up question:

What if I'm interested not in how HVA and age might uniquely account for variability in the rsfMRI data but the complement to the that: how the shared variance in age and HVA could relate to the imaging indices? Probably most efficient to handle this first on the side of the two predictor variables--i.e., calculate each subject's projection onto the first principal component of age and HVA and then use that as a qvar in 3dMVM.

Sorry. I feel like this is turning into stats therapy more than AFNI advice. Feel free to direct me to other resources you've either developed or found useful.



Edited 1 time(s). Last edit at 12/15/2021 08:03PM by paul.hamilton.
Subject Author Posted

3dMVM beginner question: one group, two qvars

paul.hamilton December 15, 2021 06:57PM

Re: 3dMVM beginner question: one group, two qvars

gang December 16, 2021 08:41AM

Re: 3dMVM beginner question: one group, two qvars

paul.hamilton December 17, 2021 09:04AM

Re: 3dMVM beginner question: one group, two qvars

gang December 17, 2021 09:13AM

Re: 3dMVM beginner question: one group, two qvars

paul.hamilton December 22, 2021 06:29PM

Re: 3dMVM beginner question: one group, two qvars

gang December 27, 2021 12:01PM

Re: 3dMVM beginner question: one group, two qvars

paul.hamilton January 07, 2022 12:12AM

Re: 3dMVM beginner question: one group, two qvars

gang December 27, 2021 12:00PM