AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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csayre
January 18, 2022 08:35AM
Hello all,

I am hoping someone can shed some light on an issue that I am having. I am running afni version 21.2.01. The afni program loads but right after it gets loaded the RDP session that I am viewing the computer through crashes. I am able to reconnect to the computer and relaunch afni but the same issue happens. I am running afni on RHEL 7.8. Please let me know what log files you need to troubleshoot this issue.

testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : FAILURE
3dSkullStrip: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
uber_subject.py : success
3dAllineate : success
3dRSFC : FAILURE
3dRSFC: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
SurfMesh : success
3dClustSim : success
3dMVM : success


For the life of me, I cannot get this fixed. libgsl.so.0: cannot open shared object file: No such file or directory.

Thanks for the help!

Ptaylor:
OK, cool, glad that most things are getting there.

Re. GSL: on some Linux (e.g., Ubuntu 20.04), we have to make a soft link. Just to see what is there on your RHel system, what is the output of:
locate libgsl.so
?


Csayre:
Comes back with this.

locate libgsl.so
/usr/lib/libgsl.so.0
/usr/lib/libgsl.so.23
/usr/lib/libgsl.so.23.1.0
/usr/lib64/libgsl.so.23
/usr/lib64/libgsl.so.23.1.0
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Subject Author Posted

libgsl.so.0 not found RHEL8

csayre January 18, 2022 08:35AM

Re: libgsl.so.0 not found RHEL8

rick reynolds January 18, 2022 09:17PM