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March 03, 2021 01:52PM
Hello,
I am trying to add an additional annotation (DKTatlas). I see there is a new flag, -extra_annot_labels that I think should do what I want.

For reference, I am running:
Precompiled binary linux_openmp_64: Jan 18 2021 (Version AFNI_21.0.04 'Titus')

I used the command:
@SUMA_Make_Spec_FS -NIFTI -extra_annot_labels DKTatlas -sid sub-CSA006

I also tried

@SUMA_Make_Spec_FS -NIFTI -extra_annot_labels aparc.DKTatlas -sid sub-CSA006

As the help says it wants the files to exist with the name
lh.LABEL.annot
rh.LABEL.annot

for the DKTatlas, there is:

In the label directory:
aparc.annot.DKTatlas.ctab
lh.aparc.DKTatlas.annot
rh.aparc.DKTatlas.annot

In the mri directory:
aparc.DKTatlas+aseg.mgz

It seems to register the flag, as it says on line 2 of the output: ++ will track 1 extra annot labels

But then it never gives an error message, or tries to do anything with the DKTatlas.

Any help is much appreciated!
Stephanie McMains
Subject Author Posted

@SUMA_Make_Spec_FS with additional annotations

activatedvoxel March 03, 2021 01:52PM

Re: @SUMA_Make_Spec_FS with additional annotations

ptaylor March 08, 2021 02:15PM

Re: @SUMA_Make_Spec_FS with additional annotations

activatedvoxel March 17, 2021 09:58AM

Re: @SUMA_Make_Spec_FS with additional annotations

ptaylor March 17, 2021 04:11PM

Re: @SUMA_Make_Spec_FS with additional annotations

activatedvoxel March 22, 2021 03:29PM

Re: @SUMA_Make_Spec_FS with additional annotations

activatedvoxel April 06, 2021 03:17PM

Re: @SUMA_Make_Spec_FS with additional annotations

ptaylor April 06, 2021 03:24PM



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