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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Not sure which version I had sorry. I installed it over two years ago and never updated until now, so I am guessing it was very outdated, though.
by
Mareike
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AFNI Message Board
That did it! Everything is working fine again. Previously I copied the 3dvolreg from my old neurodebian version of afni, so I guess that may have been the problem. Thank you both very very much!!
(I am running freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0)
by
Mareike
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AFNI Message Board
I tried Peters suggestion in the beginning, to be safe I tried again now, though. Here is what it says:
mareike-desktop:~/abin> which 3dvolreg
/usr/local/freesurfer/bin/3dvolreg
mareike-desktop:~/abin> which 3dvolreg.afni
/usr/local/freesurfer/bin/3dvolreg.afni
mareike-desktop:~/abin> sudo cp /usr/local/freesurfer/bin/3dvolreg /usr/local/freesurfer/bin/3dvolreg.afni
password for
by
Mareike
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AFNI Message Board
I now upgrade my ubuntu version, removed afni and reinstalled the newest afni version from this page. I then ran into a different error, namely:
3dvolreg.afni: error while loading shared libraries: libmri.so: cannot open shared object file: No such file or directory
ERROR: 3dvolreg.afni
Invalid null command.
I fixed this error by downloading again the NeuroDebian afni version and copying
by
Mareike
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AFNI Message Board
Thank you for the quick response. This unfortunately did not fix the problem. Below my output for afni_system_check.py. It seems I have two afni versions in my path. I wonder is that is causing the problem? Should I simply delete the file /usr/lib/afni/bin/afni?
mareike@mareike-linux:/usr/local/freesurfer$ afni_system_check.py -check_all
-------------------------------- general --------------
by
Mareike
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AFNI Message Board
Dear all,
When trying to preprocess my functional mri data with the following command (preproc-sess -s sess04 -fsd bold -stc up -surface fsaverage lhrl -mni305 -fwhm 5 -per-run), I get the follwing error message:
Fatal Signal 11 (SIGSEGV) received
mri_add_name
mri_to_float
mri_3dalign_setup
3dvolreg main
Bottom of Debug Stack
** AFNI version = AFNI_2011_12_21_1014 Comp
by
Mareike
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AFNI Message Board