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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hi all,
I am in the same boat here, with higher resolution (normalized in ANTs) than AFNI seems to allow. I'd prefer not to resample my data again. Is there a way to bypass this with some flag to allow more voxels for Clustsim?
Thanks!
Rachel
by
rnauer
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AFNI Message Board
Hi Peter,
Thanks so much for your quick response.
I should also mention that the first time I tried the align_epi_anat.py, I was using .nii files. I was getting an error during SkullStripping that would not allow it to finish, and told me to deoblique my dataset. I then tried the 3dWarp -deoblique on my .nii files which gave me the proper .BRIK and .HEAD files that I use on align_epi_anat
by
rnauer
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AFNI Message Board
Hi all,
I am very new to AFNI and have a question regarding deobliquing so that I can properly align my data. A bit of background: I wish to align a T1 anatomical with a high-resolution T2 anatomical, and then also align my functionals to the T2. Right now, the align_epi_anat.py throws the error that my datasets are obliqued.
So, I used the 3dWarp_deoblique and re-ran the align_epi_anat.p
by
rnauer
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AFNI Message Board