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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hello, I've a question with registration.
First question is "Can I use align_epi_anat.py when I want to do cross modality registration, for example T1 and DTI?"
If I can use it, this is the command I'm planning to use it.
align_epi_anat.py -anat t1+orig -epi dwi+orig -epi_base 0 -suffix _al2anat -epi2anat -anat_has_skull no -giant_move -tshift off -volreg_method 3dAll
by
MichelleK
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AFNI Message Board
Thank you!
hitting the letter 'o' is the answer I was looking for.
I want to have a whole brain's anatomical surface viewed simultaneously with tracts.
I think I've got what I wanted.
Thank you for your kindness.
Have a good day! :)
MK
by
MichelleK
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AFNI Message Board
Thank you for the reply.
I used suma -i anat.gii -tract L_pL_000.niml.tract, and it work fine.
but I want the anat.gii figure to be transparent, so I can see the tract with T1 file.
Could you please provide me some tips to do it?
Thank you.
MK
by
MichelleK
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AFNI Message Board
oh. I don't have the FATCAT demo..
That's why it's not working.
Anyway for the second question,
I first did 3dSkullStrip -input anat+orig -prefix anat -o_gii anat
and then suma -npb 10 -anat.gii -niml &.
then check my tract file using suma -tract L_pL_000.niml.tract.
After that, I would like to see the tract with my anat file.
so I typed the DriveSuma -npb 10 -com vie
by
MichelleK
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AFNI Message Board
well,
when I tried "suma -tract L_pL_000.niml.tract" and "suma -npb 10 -i anat.gii -niml &" it worked fine.
MK
by
MichelleK
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AFNI Message Board
Hello.
I'm having trouble with visualizing my tract created from 3dTrackID.
DriveSuma -npb 10 -com viewer_cont -load_do L_pL_000.niml.tract
this is the command I used. and I got the following error..
SUMA_niml_call: Contacting on tcp:127.0.0.1:1272 (6), maximum wait 300.000 sec
(You can change max. wait time with env. SUMA_DriveSumaMaxWait)
........................................
by
MichelleK
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AFNI Message Board