Show all posts by user
Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
Page 1 of 1 Pages: 1
Results 1 - 7 of 7
Hello Ziad,
I have uploaded the data files. I hope they 'll be helpful.
I will look forward to your suggestions,
Thank you.
by
rsingh
-
AFNI Message Board
Thank you Peter,
I will try your suggestions.
Joust curious, is there a way I can calculate the total Brain volume using AFNI program with Mprage T1 images? That way I may not have to worry about the FreeSurfer Skull strip error issue of including extra non brain tissue.
Rashmi
by
rsingh
-
AFNI Message Board
The error I am getting is after running freesurfer on mprage T1 images. I am doing volumetrics study where I am using freesurfer to determine the measurements of cortical an dsubcortical regions. The subcortical masks as well as the white matter/gray matter outlines seems to be OK after the freesurfer run. I am using whole brain volume as a co-variate for statistical analysis, but due to errors i
by
rsingh
-
AFNI Message Board
Hello experts,
This is Rashmi from LIBR Tulsa.
I am facing skull stripping errors while processing my Mprage data.
I am in the preprocessing stage of resting state analysis.
The skull stripping option in the afni_restproc.py resulted in brain volume that lacked whole of the occipital lobe, and parts of brain stem and cerebellum.
So I tried the following option as suggested by Dr Bellgowan:
by
rsingh
-
AFNI Message Board
Facing errors in skull stripping in freesurfer runs, any suggestions to edit then using afni
by
rsingh
-
AFNI Message Board