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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Thank you so much! These resources are great and I was able to find the answer to my specific question pretty quickly.
So just to confirm, using -tlrc_base MNI152_T1_2009c+tlrc would specify that we want the output files to be registered to the MNI 2009c template?
by
neha_sinha132
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AFNI Message Board
Dear AFNI experts,
I am new to AFNI and looking for guidance regarding putting individual subjects in MNI space in the proc_py script.
As per the the documentation for proc_py, 'volreg_tlrc_warp' can be used to put the images in Talariach space. How can I indicate in proc_py that I want the epi and anatomical to be put in MNI space?
Thank you for your help,
Neha
by
neha_sinha132
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AFNI Message Board
Hi,
The output is:
/usr/lib/x86_64-linux-gnu/libgslcblas.so
/usr/lib/x86_64-linux-gnu/libgslcblas.a
/usr/lib/x86_64-linux-gnu/libgsl.so
/usr/lib/x86_64-linux-gnu/libgslcblas.so.0.0.0
/usr/lib/x86_64-linux-gnu/libgsl.so.19
/usr/lib/x86_64-linux-gnu/libgslcblas.so.0
/usr/lib/x86_64-linux-gnu/libgsl.a
/usr/lib/x86_64-linux-gnu/libgsl.so.19.0.0
by
neha_sinha132
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AFNI Message Board
The libgsl-dev install was successful. Here is the output from afni_system_check
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 4.4.0-45-generic
version: #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016
distribution: Ubuntu 16.04 xenial
number of CPUs: 36
a
by
neha_sinha132
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AFNI Message Board
Thanks for getting back to me Rick. Here is the output of "afni_system_check.py -check_all"
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 4.4.0-45-generic
version: #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016
distribution: Ubuntu 16.04 xenial
number
by
neha_sinha132
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AFNI Message Board
Hi Peter,
I am having the same issue on Ubuntu 16.04. Do you know of a work around?
by
neha_sinha132
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AFNI Message Board
Hi,
I recently installed AFNI on Ubuntu 16.04. When I try to run the superscript afni_proc.py, it gives me an error at 3dSkullStrip (error message: missing a library lib.gsl.so.0); BUT 3dSkullStrip runs fine alone.
I had the exact same issue with Mac OS X El Capitan (becasue of its "System Integrity Protection" feature), which I was able to fix using "csrutil disable" com
by
neha_sinha132
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AFNI Message Board