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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hi, Louis-
I edited this post so that your email address would not be directly included here; that might help reduce the chance that you get spammed later, e.g., by bots scraping webpages. (And I have responded both my email in and in the thread.)
--pt
-----------------------------------------------------
Dear Ptaylor,
Really thank to your help.
I am looking forward to your file
by
louislee0722
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AFNI Message Board
Dear Afni experts:
I recently use uber_subject.py to process my BOLD data
following is my cmd.ap file
#!/usr/bin/env tcsh
# created by uber_subject.py: version 1.2 (April 5, 2018)
# creation date: Mon Jan 27 17:34:50 2020
# set subject and group identifiers
set subj = test
set gname = a1
# set data directory
set top_dir = /Volumes/SSUJU/NTHU_${subj}
# run afni_proc.py to
by
louislee0722
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AFNI Message Board
Dear afni experts
I have tried many times to launch my uber_subject.py
Following is my output of afni_system_check.py -check_all
==========================================
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 18.7.0
version: Darwin Kernel Version 18.7.0: S
by
louislee0722
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AFNI Message Board
Dear all
I just update my MaxcOX
and I can't use uber.subject.py anymore
When I type uber_subject.py it will popped this
And I have tried many to install PyQt4....but it said I have already installed, I don't know how to set it.
**** failed to import PyQt4.QtGui ****
PyQt4 must be installed to run the uber_subject.py GUI
--> see the output of: uber_subject.py -help_i
by
louislee0722
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AFNI Message Board
Hi Daniel
I have tried uber_subject.py to analyze data.
My raw data, both anatomical and functional image are 10 slices, when I click on anat has skull.
It pops up error with image <16 slices, can't skull stripping.
So I tried to click off this option, following is my error again.
echo auto-generated by afni_proc.py, Tue May 30 10:53:06 2017
auto-generated by afni_proc.py, Tue M
by
louislee0722
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AFNI Message Board
Hi
Thank you very much.
I have tried uber_subject.py, but it comes up with error.
the anatomical image I put the atlas
the epi image I put the single session functional data
Should I change the parameters or I have to realign my functional data to my anatomical data, then realign again to the atlas?
Thanks again
by
louislee0722
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AFNI Message Board
Dear AFNI experts:
I am new to this software, I have four groups of data, One is sham-Control, the other is after treatment.
Control before, Control after
Treatment before, Treatment after
actually, control before is likely to treatment before
I want to use afni to compare this 4 groups, within group and between group
The data format is img/hdr
I don't know how to convert it i
by
louislee0722
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AFNI Message Board