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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Thanks for this workaround. We're still getting occasional crashes from extended use of DriveSuma, but we'll keep at it.
by
jmagnotti
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AFNI Message Board
sorry, I should have been more clear. I can actually crash SUMA by opening/closing the surface controller twice, even when just the toy surfaces are loaded. I tried upgrading and downgrading XQuartz (2.7.8 vs. 2.7.11) but that hasn't made a difference.
by
jmagnotti
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AFNI Message Board
Thanks for this test script. I noticed that:
jmagnotti% afni -available_npb_quiet
0
Does this mean there is not available ports for communication?
The script runs and shows the pop-up, but I do get an error message, it appears AFTER I click "OK" in the popup.
jmagnotti% DriveSuma $NPB -com pause "Testing suma"
+++ Command Echo:
DriveSuma -npb 0 -pif Drive
by
jmagnotti
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AFNI Message Board
yes, they all work. that is the puzzling part. I can even click on the UI elements that are equivalent to the DriveSuma command without any issue. It's only when I use DriveSuma that I get the error.
by
jmagnotti
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AFNI Message Board
> echo $DYLD_LIBRARY_PATH
/opt/X11/lib/flat_namespace
I'm typing the commands directly into the terminal, they're not being run within a script.
thanks for your help!
by
jmagnotti
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AFNI Message Board
I have it in both ~/.cshrc
setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace
and ~/.bashrc
export DYLD_LIBRARY_PATH=/opt/X11/lib/flat_namespace
Is there a way to check if AFNI is reading the value correctly?
by
jmagnotti
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AFNI Message Board
Similar to some recent DriveSuma posts, I'm trying to use DriveSuma on MacOS Sierra (10.12.5) and with July 2017 AFNI, but it reliably crashes. The crashes do not occur on MacOS Yosemite and El Capitan. Thanks for any help.
suma -spec test.spec &
DriveSuma -com surf_cont -load_dset Rain_AV_exp.niml.dset -surf_label AllElectrodes.gii
DriveSuma -com surf_cont -surf_label AllElectrod
by
jmagnotti
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AFNI Message Board