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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Hi - Any luck with registering rodent fmri > anatomical > template with the AFNI toolset? We're also interested in this problem!
Best,
John & Shahab
by
jbcocjin
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AFNI Message Board
Hi Daniel -
Thanks for your help! We tried 3dUnifize; that got us past the range issue. We're now able to execute
the command in its parameter flavors. However, when we run it with the -rat option, we don't get really any discernible mask. Using the vanilla human version yields... a mask. Using marmoset yields a much smaller mask. The attached images are for rodent and human result
by
jbcocjin
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AFNI Message Board
Hi AFNI experts -
We're trying to skull strip mouse and rat brains from T2 anatomicals. We noticed that, in 3dSkullStrip, there is a '-rat' option in the code. We tried the following command:
3dSkullStrip -input T2.nii.gz -rat
but received the error:
oo Warning 3dSkullStrip (SUMA_3dSkullStrip.c:1565):
Input dataset has a very low value range.
If stripping fails, rep
by
jbcocjin
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AFNI Message Board