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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hi there,
I'm still getting this error when I try to run the command:
set path_B_ss = data_basic/S01
set path_P_ss = data_proc/S01
fat_proc_select_vols \
-in_dwi $path_P_ss/dwi_00/ap.nii.gz \
-in_img $path_P_ss/dwi_00/ap_sepscl.sag.png \
-prefix $path_P_ss/dwi_01/dwi_sel_ap
fat_proc_select_vols \
-in_dwi $path_P_ss/dwi_00
by
ccunningham
-
AFNI Message Board
Hello,
When I run the commands:
# I/O path, same as above, following earlier steps
set path_P_ss = data_proc/S01
# ID of individual subj from "tail" of path, above
set ss_id = $path_P_ss:t
# AFNI-SUMA function: convert FS output
@SUMA_Make_Spec_FS \
-NIFTI \
-fspath $path_P_ss/anat_02
by
ccunningham
-
AFNI Message Board
Hi Rick,
Suma starts both times for me without a problem.
Catherine
by
ccunningham
-
AFNI Message Board
Was this problem resolved? Because I'm running into the exact same error.
Thanks!
Catherine
by
ccunningham
-
AFNI Message Board
Hello,
Here's the command:
set path_P_ss = data_proc/S01
fat_proc_select_vols \
-in_dwi $path_P_ss/dwi_00/ap.nii.gz \
-in_img $path_P_ss/dwi_00/ap_sepscl.sag.png \
-prefix $path_P_ss/dwi_01/dwi_sel_ap
fat_proc_select_vols \
-in_dwi $path_P_ss/dwi_00/pa.nii.gz \
-in_img $path_P_ss/dwi_00/pa_sepscl.
by
ccunningham
-
AFNI Message Board
Hi there,
When I try to run fat_proc_select_vols, this error message repeats until I terminate the command:
Fatal Signal 11 (SIGSEGV) received
SUMA_PauseForUserDisco
prompt_popup
Bottom of Debug Stack
** AFNI version = AFNI_18.1.05 Compile date = Apr 18 2018
** []
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXAC
by
ccunningham
-
AFNI Message Board
Hello,
I have started working through the prepreprocessing fatcat functions on our dti data, and I keep running into the same error running fat_proc_convert_dcm_dwis, and as a result, none of the automatic QC png images are generated. The terminal reads:
My command:
@chauffeur_afni -ulay padcombo.nii -prefix pa_qc_sepscl_3 -olay_off -montx 10 -monty 8 -globalrange SLICE -ulay_range 1%
by
ccunningham
-
AFNI Message Board