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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Here is the output from the 3dinfo command:
-108.727364 91.842567 -74.730621 3.000000 3.000000 3.000000 RPI pb01.MOV008_20180330.r01.e1.tcat.2NEW.REF-EPI1_forallineate.nii.gz
-109.027374 92.142578 -74.430626 2.400000 2.400000 2.400000 RPI pb01.MOV008_20180330.r01.e1.tcat.2NEW.nii.gz
I should also clarify that the command I sent you was one I did for just testing out the banding, which is w
by
bes2037
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AFNI Message Board
Hi,
Here are my exact commands. Here is what I did when using mast_dxyz:
3dAllineate -overwrite -base pb01.MOV008_20180330.r01.e1.tcat.2NEW.nii.gz -input pb01.MOV008_20180330.r01.e1.tcat.2NEW.nii.gz -1Dmatrix_apply pb01.MOV008_20180330.r01.e1.tcat.2NEW.motion_REF-EPI1.aff12.1D -mast_dxyz 3 -prefix pb01.MOV008_20180330.r01.e1.tcat.2NEW.REF-EPI1_forallineate.nii.gz
And here is what I did
by
bes2037
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AFNI Message Board
Hi there. I am having an issue with 3dAllineate. I am resampling with grid spacings of 3mm (either by using mast_dxyz or by using a base with 3mm grid spacings), but then when I create a temporal standard deviation image from the resulting .nii file, it has very visible striped brands across the whole brain. Is this a known problem that has come up before? Any idea what I am doing that is causing
by
bes2037
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AFNI Message Board