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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
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Great! That allowed me to run that tcsh @update line.
But now when I check all:
mollywilkinson% afni_system_check.py -check_all
afni_system_check.py: Command not found.
by
mollykwilkinson
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AFNI Message Board
Ok, hopefully last question....
Permission denied in this last step? I can see the abin folder in my home directory (mollywilkinson).
mollywilkinson% tcsh @update.afni.binaries -package macos_10.12_local -do_extras
-- running @update.afni.binaries version 3.20, May 3, 2022
-- no current AFNI package found in path...
-- install dir: using default ~/abin
-- any downloads will be from via
by
mollykwilkinson
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AFNI Message Board
Awesome! Thank you.
The Rscript seemed to have worked.
Unfortunately I'm getting another error:
mollywilkinson% curl -O
curl: No match.
I tried putting the website in single quotes, as my Google search suggested but that resulted in:
mollywilkinson% curl -O 'afni.nimh.nih.gov'
curl: Remote file name has no length!
I really appreciate your help on all this!
by
mollykwilkinson
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AFNI Message Board
mollywilkinson% cat ~/.zshrc
# >>> conda initialize >>>
# !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/opt/anaconda3/bin/conda' 'shell.zsh' 'hook' 2> /dev/null)"
if [ $? -eq 0 ]; then
eval "$__conda_setup"
else
if [ -f "/opt/anaconda3/etc/profile.d/conda.sh&qu
by
mollykwilkinson
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AFNI Message Board
Perfect! That worked to get past those commands.
And yes you're right, there are probably different path settings. When I get to the last line in that "touch zshrc" block I get this output:
mollywilkinson% source ~/.zshrc
Illegal variable name.
by
mollykwilkinson
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AFNI Message Board
Hi Justin,
Thanks for your reply.
Here is the output of the first command:
mollywilkinson% ls -l ~/.zshrc
-rw-r--r-- 1 root staff 446 Jun 8 12:20 /Users/mollywilkinson/.zshrc
This is my personal computer, so no one else has created any files on here.
Here is the output of the second:
cat ~/.zshrc
# >>> conda initialize >>>
# !! Contents within this bl
by
mollykwilkinson
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AFNI Message Board
Hi Justin,
Thanks! Very helpful. Yes, I do have admin access on my computer based on System Preferences.
All of the commands work great until the 5th code block. I ran everything in the Rosetta terminal. I'm not sure if this should be using zsh, which is the default on this new Mac, or bash. I have put the output below for both:
zsh output:
(base) mollywilkinson@Mollys-MacBook-Pro
by
mollykwilkinson
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AFNI Message Board
Hi,
I am looking for some assistance on downloading AFNI on a new computer. It is one of the new Macs with the M1 processor. I read another discussion on the Message Board (topic: M1 processor compatibility?) and tried downloading with the use of a Rosetta terminal. However, I am still getting an error at the R step.
mollywilkinson% sudo rPkgsInstall -pkgs ALL
sudo: rPkgsInstall: command
by
mollykwilkinson
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AFNI Message Board