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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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That worked! Thanks so much! I guess "big move" wasn't big enough.
by
erobbins105
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AFNI Message Board
I'm additionally attaching a screenshot of what the two datasets look like with the anat underlay and EPI overlay, before running afni_proc.py.
Any help would be MUCH appreciated. Hard to do much if you can't even get alignment. Thanks!
by
erobbins105
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AFNI Message Board
Sure! This is the most recent version I've run (I've played around with some of the options but haven't had any success).
afni_proc.py -subj_id $subj \
-copy_anat $pre_anat_dir/OutBrick_run_00?+orig.BRIK \
-dsets $pre_RS_dir/OutBrick_run_00?+orig.BRIK \
-blocks despike tshift align tlrc volreg blur mask regr
by
erobbins105
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AFNI Message Board
Hi there,
I've been troubleshooting myself for a few days, but have seem to come to no solution.
For my resting state project, I am trying to do a simple pre-processing using afni_proc.py. It looks like my epi and anat files are really out of alignment. But before even doing that, I had to convert my dicom files to afni, and I think this is where the mis-alignment begins. I used dimon fo
by
erobbins105
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AFNI Message Board