Show all posts by user
Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
History of AFNI updates
Page 1 of 1 Pages: 1
Results 1 - 2 of 2
Hello PT,
Thank you for your help with this. I tried align_epi_anat.py with ginormous move, anat_has_skull no, and epi_strip None and still didn't have luck with good alignment (see image).
align_epi_anat.py -epi2anat \
-epi pb02.sub002.r01.despike+orig \
-anat sub002t1_ns+orig \
-epi_strip None \
-anat_has_skull no \
-epi_base 0 -vol
by
jgoold
-
AFNI Message Board
Hello,
I am having issues with the alignment step of the afniproc.py script for 5 of 25 subjects. I'm attaching the script I use and an example of the misalignment in a subject.
#!/bin/tcsh -f
set subjects = "sub028"
foreach s ( $subjects )
cd $s
afni_proc.py -subj_id $s \
-script proc.$s -scr_overwrite
by
jgoold
-
AFNI Message Board